1 HisKA#1
459-525 aa · 67 aa · 9.8% of protein
Raw token
HisKA:459:5.33e-16:525:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ79_RS09415
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210315
ClassHKTypeClassicLength683 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210315#PMZ79_RS09415Stable P2CS identifier used across views.
GenomeGCF_028210315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length683 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 683 aa (23.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa683 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
571-664 aa · 94 aa · 13.8% of protein
Raw token
HATPase_c:571:0.000000000000271:664:98:109- Raw architecture: HisKA:459:5.33e-16:525:67:64#HATPase_c:571:0.000000000000271:664:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210315::NZ_JAQLHG010000009.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53798-56528Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ79_09425RefSeq proteinWP_143331538.1
Context group ID
GCF_028210315::NZ_JAQLHG010000009.1::G00039Context members
PMZ79_RS09410PMZ79_RS09415
Partner locus tags
PMZ79_RS09410PMZ79_RS09415
Partner old locus tags
PMZ79_09420PMZ79_09425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_143331538.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ79_RS09415Primary locus identifier stored in the genes table.
Old locus tagPMZ79_09425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHG010000009.1Sequence record reported by the local genomic context database.
Genomic interval54 477-56 528 nt2 052 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 798-56 528 ntGCF_028210315::NZ_JAQLHG010000009.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210315::NZ_JAQLHG010000009.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHG010000009.1All displayed genes belong to this local TCS context.
Neighborhood span53 798-56 528 nt2 731 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 798 nt56 528 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMZ79_RS09410GCF_028210315#PMZ79_RS09410
RROmpR
53 798-54 499 nt · Forward (+)
PMZ79_RS09415GCF_028210315#PMZ79_RS09415
HKClassicCurrent focus
54 477-56 528 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0101140Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0808434
Simplified PFAM architecture for HKOC_0808434
PFAM domain coverage: 158 / 683 aa (23.1%)
1 aa683 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[459-524] | HATPase_c[572-663]
- Domain count: 2
- Matched identifier: HKOC_0808434
- Positioned domains: HisKA 459-524 ; HATPase_c 572-663
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0101140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210315
AssemblyASM2821031v1 · Scaffoldhaploid
Genome composition3 618 798 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key