1 HAMP#1
195-264 aa · 70 aa · 14.0% of protein
Raw token
HAMP:195:0.0000000000702:264:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ79_RS08795
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210315
ClassHKTypeClassicLength499 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210315#PMZ79_RS08795Stable P2CS identifier used across views.
GenomeGCF_028210315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 499 aa (49.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation3 items
2 HisKA#2
276-342 aa · 67 aa · 13.4% of protein
Raw token
HisKA:276:0.00000000000000452:342:67:643 HATPase_c#3
389-497 aa · 109 aa · 21.8% of protein
Raw token
HATPase_c:389:6.35e-25:497:112:109- Raw architecture: HAMP:195:0.0000000000702:264:70:69#HisKA:276:0.00000000000000452:342:67:64#HATPase_c:389:6.35e-25:497:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210315::NZ_JAQLHG010000008.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115494-117690Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ79_08805RefSeq proteinWP_271838096.1
Context group ID
GCF_028210315::NZ_JAQLHG010000008.1::G00037Context members
PMZ79_RS08795PMZ79_RS08800
Partner locus tags
PMZ79_RS08795PMZ79_RS08800
Partner old locus tags
PMZ79_08805PMZ79_08810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271838096.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ79_RS08795Primary locus identifier stored in the genes table.
Old locus tagPMZ79_08805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHG010000008.1Sequence record reported by the local genomic context database.
Genomic interval115 494-116 993 nt1 500 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 494-117 690 ntGCF_028210315::NZ_JAQLHG010000008.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210315::NZ_JAQLHG010000008.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHG010000008.1All displayed genes belong to this local TCS context.
Neighborhood span115 494-117 690 nt2 197 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 494 nt117 690 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMZ79_RS08795GCF_028210315#PMZ79_RS08795
HKClassicCurrent focus
115 494-116 993 nt · Reverse (-)
PMZ79_RS08800GCF_028210315#PMZ79_RS08800
RROmpR
116 983-117 690 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028210315#PMZ79_RS08795The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1484535
Simplified PFAM architecture for HKOC_1484535
PFAM domain coverage: 219 / 499 aa (43.9%)
1 aa499 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[219-263] | HisKA[276-342] | HATPase_c[389-495]
- Domain count: 3
- Matched identifier: HKOC_1484535
- Positioned domains: HAMP 219-263 ; HisKA 276-342 ; HATPase_c 389-495
Cluster members and taxonomy
Representative gene: GCF_028210315#PMZ79_RS08795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210315
AssemblyASM2821031v1 · Scaffoldhaploid
Genome composition3 618 798 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key