1 HAMP#1
172-240 aa · 69 aa · 11.3% of protein
Raw token
HAMP:172:0.000000109:240:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ79_RS08095
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210315
ClassHKTypeClassicLength608 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_028210315#PMZ79_RS08095Stable P2CS identifier used across views.
GenomeGCF_028210315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length608 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage357 / 608 aa (58.7%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa608 aa
Domain-by-domain annotation4 items
2 PAS#2
257-363 aa · 107 aa · 17.6% of protein
Raw token
PAS:257:0.0000000424:363:110:1133 HisKA#3
372-439 aa · 68 aa · 11.2% of protein
Raw token
HisKA:372:1.38e-21:439:68:644 HATPase_c#4
485-597 aa · 113 aa · 18.6% of protein
Raw token
HATPase_c:485:1.51e-26:597:113:109- Raw architecture: HAMP:172:0.000000109:240:69:69#PAS:257:0.0000000424:363:110:113#HisKA:372:1.38e-21:439:68:64#HATPase_c:485:1.51e-26:597:113:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_028210315::NZ_JAQLHG010000007.1::G00034
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span131755-137659Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ79_08100RefSeq proteinWP_271841242.1
Context group ID
GCF_028210315::NZ_JAQLHG010000007.1::G00034Context members
PMZ79_RS08085PMZ79_RS08090PMZ79_RS08095PMZ79_RS08100
Partner locus tags
PMZ79_RS08085PMZ79_RS08090PMZ79_RS08095PMZ79_RS08100
Partner old locus tags
PMZ79_08090PMZ79_08095PMZ79_08100PMZ79_08105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271841242.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ79_RS08095Primary locus identifier stored in the genes table.
Old locus tagPMZ79_08100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHG010000007.1Sequence record reported by the local genomic context database.
Genomic interval135 193-137 019 nt1 827 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span131 755-137 659 ntGCF_028210315::NZ_JAQLHG010000007.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210315::NZ_JAQLHG010000007.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHG010000007.1All displayed genes belong to this local TCS context.
Neighborhood span131 755-137 659 nt5 905 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
131 755 nt137 659 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
PMZ79_RS08085GCF_028210315#PMZ79_RS08085
HKClassic
131 755-134 472 nt · Forward (+)
PMZ79_RS08090GCF_028210315#PMZ79_RS08090
RROmpR
134 441-135 133 nt · Forward (+)
PMZ79_RS08095GCF_028210315#PMZ79_RS08095
HKClassicCurrent focus
135 193-137 019 nt · Forward (+)
PMZ79_RS08100GCF_028210315#PMZ79_RS08100
RRunclassified
136 997-137 659 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028210315#PMZ79_RS08095The current gene is the representative for this cluster.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1016639
Simplified PFAM architecture for HKOC_1016639
PFAM domain coverage: 256 / 608 aa (42.1%)
1 aa608 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[256-331] | HisKA[372-439] | HATPase_c[486-597]
- Domain count: 3
- Matched identifier: HKOC_1016639
- Positioned domains: PAS 256-331 ; HisKA 372-439 ; HATPase_c 486-597
Cluster members and taxonomy
Representative gene: GCF_028210315#PMZ79_RS08095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210315
AssemblyASM2821031v1 · Scaffoldhaploid
Genome composition3 618 798 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key