1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:1.12e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ79_RS07045
Response regulator OmpR family
Clostridium paraputrificum · GCF_028210315
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210315#PMZ79_RS07045Stable P2CS identifier used across views.
GenomeGCF_028210315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:149:1.87e-29:225:77:77- Raw architecture: Response_reg:4:1.12e-34:113:111:111#Trans_reg_C:149:1.87e-29:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210315::NZ_JAQLHG010000006.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span123184-125668Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ79_07050RefSeq proteinWP_055185082.1
Context group ID
GCF_028210315::NZ_JAQLHG010000006.1::G00032Context members
PMZ79_RS07040PMZ79_RS07045
Partner locus tags
PMZ79_RS07040PMZ79_RS07045
Partner old locus tags
PMZ79_07045PMZ79_07050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055185082.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3GHS1Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3GHS1_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ79_RS07045Primary locus identifier stored in the genes table.
Old locus tagPMZ79_07050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHG010000006.1Sequence record reported by the local genomic context database.
Genomic interval124 979-125 668 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span123 184-125 668 ntGCF_028210315::NZ_JAQLHG010000006.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210315::NZ_JAQLHG010000006.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHG010000006.1All displayed genes belong to this local TCS context.
Neighborhood span123 184-125 668 nt2 485 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 184 nt125 668 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMZ79_RS07040GCF_028210315#PMZ79_RS07040
HKClassic
123 184-124 995 nt · Reverse (-)
PMZ79_RS07045GCF_028210315#PMZ79_RS07045
RROmpRCurrent focus
124 979-125 668 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS12045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253446
Simplified PFAM architecture for RROC_1253446
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1253446
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS12045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210315
AssemblyASM2821031v1 · Scaffoldhaploid
Genome composition3 618 798 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key