1 HisKA#1
121-172 aa · 52 aa · 15.4% of protein
Raw token
HisKA:121:0.0000197:172:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ79_RS06865
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210315
ClassHKTypeClassicLength337 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210315#PMZ79_RS06865Stable P2CS identifier used across views.
GenomeGCF_028210315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 337 aa (46.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
228-330 aa · 103 aa · 30.6% of protein
Raw token
HATPase_c:228:4.62e-19:330:103:109- Raw architecture: HisKA:121:0.0000197:172:58:64#HATPase_c:228:4.62e-19:330:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210315::NZ_JAQLHG010000006.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82037-83712Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ79_06870RefSeq proteinWP_055185092.1
Context group ID
GCF_028210315::NZ_JAQLHG010000006.1::G00031Context members
PMZ79_RS06865PMZ79_RS06870
Partner locus tags
PMZ79_RS06865PMZ79_RS06870
Partner old locus tags
PMZ79_06870PMZ79_06875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055185092.1Primary protein accession used for annex mappings.
UniProt accessionA0A1B8RLK4Primary UniProt accession resolved in the annex database.
UniProt IDA0A1B8RLK4_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ79_RS06865Primary locus identifier stored in the genes table.
Old locus tagPMZ79_06870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHG010000006.1Sequence record reported by the local genomic context database.
Genomic interval82 037-83 050 nt1 014 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span82 037-83 712 ntGCF_028210315::NZ_JAQLHG010000006.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210315::NZ_JAQLHG010000006.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHG010000006.1All displayed genes belong to this local TCS context.
Neighborhood span82 037-83 712 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 037 nt83 712 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMZ79_RS06865GCF_028210315#PMZ79_RS06865
HKClassicCurrent focus
82 037-83 050 nt · Reverse (-)
PMZ79_RS06870GCF_028210315#PMZ79_RS06870
RROmpR
83 047-83 712 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS14245Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2844548
Simplified PFAM architecture for HKOC_2844548
PFAM domain coverage: 109 / 337 aa (32.3%)
1 aa337 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[223-331]
- Domain count: 1
- Matched identifier: HKOC_2844548
- Positioned domains: HATPase_c 223-331
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS14245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210315
AssemblyASM2821031v1 · Scaffoldhaploid
Genome composition3 618 798 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key