1 HisKA_3#1
177-244 aa · 68 aa · 17.4% of protein
Raw token
HisKA_3:177:8.79e-19:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ79_RS06230
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210315
ClassHKTypeClassicLength391 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210315#PMZ79_RS06230Stable P2CS identifier used across views.
GenomeGCF_028210315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length391 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 391 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa391 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
281-377 aa · 97 aa · 24.8% of protein
Raw token
HATPase_c:281:0.000000000000719:377:106:109- Raw architecture: HisKA_3:177:8.79e-19:244:68:68#HATPase_c:281:0.000000000000719:377:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210315::NZ_JAQLHG010000005.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span172442-174263Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ79_06235RefSeq proteinWP_034865878.1
Context group ID
GCF_028210315::NZ_JAQLHG010000005.1::G00028Context members
PMZ79_RS06225PMZ79_RS06230
Partner locus tags
PMZ79_RS06225PMZ79_RS06230
Partner old locus tags
PMZ79_06230PMZ79_06235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_034865878.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BWH3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BWH3_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ79_RS06230Primary locus identifier stored in the genes table.
Old locus tagPMZ79_06235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHG010000005.1Sequence record reported by the local genomic context database.
Genomic interval173 088-174 263 nt1 176 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span172 442-174 263 ntGCF_028210315::NZ_JAQLHG010000005.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210315::NZ_JAQLHG010000005.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHG010000005.1All displayed genes belong to this local TCS context.
Neighborhood span172 442-174 263 nt1 822 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
172 442 nt174 263 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMZ79_RS06225GCF_028210315#PMZ79_RS06225
RRNarL
172 442-173 110 nt · Reverse (-)
PMZ79_RS06230GCF_028210315#PMZ79_RS06230
HKClassicCurrent focus
173 088-174 263 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0104210Use this link to inspect the representative gene detail.
PFAM architectureDegS + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2519578
Simplified PFAM architecture for HKOC_2519578
PFAM domain coverage: 317 / 391 aa (81.1%)
1 aa391 aa
DegSHisKA_3HATPase_c
- Simplified architecture: DegS + HisKA_3 + HATPase_c
- Raw architecture: DegS[13-165] | HisKA_3[177-243] | HATPase_c[282-378]
- Domain count: 3
- Matched identifier: HKOC_2519578
- Positioned domains: DegS 13-165 ; HisKA_3 177-243 ; HATPase_c 282-378
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0104210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210315
AssemblyASM2821031v1 · Scaffoldhaploid
Genome composition3 618 798 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key