1 dCache_1#1
124-278 aa · 155 aa · 26.1% of protein
Raw token
dCache_1:124:9.35e-17:278:159:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ79_RS00350
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210315
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210315#PMZ79_RS00350Stable P2CS identifier used across views.
GenomeGCF_028210315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage409 / 594 aa (68.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation4 items
2 HAMP#2
295-363 aa · 69 aa · 11.6% of protein
Raw token
HAMP:295:0.0000000048:363:69:693 His_kinase#3
379-458 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:379:1.83e-34:458:80:804 HATPase_c#4
474-578 aa · 105 aa · 17.7% of protein
Raw token
HATPase_c:474:3.56e-17:578:109:109- Raw architecture: dCache_1:124:9.35e-17:278:159:195#HAMP:295:0.0000000048:363:69:69#His_kinase:379:1.83e-34:458:80:80#HATPase_c:474:3.56e-17:578:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210315::NZ_JAQLHG010000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70733-74125Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ79_00350RefSeq proteinWP_027097132.1
Context group ID
GCF_028210315::NZ_JAQLHG010000001.1::G00015Context members
PMZ79_RS00345PMZ79_RS00350
Partner locus tags
PMZ79_RS00345PMZ79_RS00350
Partner old locus tags
PMZ79_00345PMZ79_00350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027097132.1Primary protein accession used for annex mappings.
UniProt accessionA0A174USY8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174USY8_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ79_RS00350Primary locus identifier stored in the genes table.
Old locus tagPMZ79_00350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHG010000001.1Sequence record reported by the local genomic context database.
Genomic interval72 341-74 125 nt1 785 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 733-74 125 ntGCF_028210315::NZ_JAQLHG010000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210315::NZ_JAQLHG010000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span70 733-74 125 nt3 393 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 733 nt74 125 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMZ79_RS00345GCF_028210315#PMZ79_RS00345
RRunclassified
70 733-72 331 nt · Forward (+)
PMZ79_RS00350GCF_028210315#PMZ79_RS00350
HKClassicCurrent focus
72 341-74 125 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0102585Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1087267
Simplified PFAM architecture for HKOC_1087267
PFAM domain coverage: 467 / 594 aa (78.6%)
1 aa594 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[45-277] | HAMP[313-361] | His_kinase[380-458] | HATPase_c[474-579]
- Domain count: 4
- Matched identifier: HKOC_1087267
- Positioned domains: dCache_1 45-277 ; HAMP 313-361 ; His_kinase 380-458 ; HATPase_c 474-579
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0102585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210315
AssemblyASM2821031v1 · Scaffoldhaploid
Genome composition3 618 798 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key