1 sCache_2#1
208-320 aa · 113 aa · 14.9% of protein
Raw token
sCache_2:208:0.000000000141:320:115:152P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ67_RS17820
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_028207305
ClassHKTypeHybridLength760 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028207305#PMZ67_RS17820Stable P2CS identifier used across views.
GenomeGCF_028207305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
sCache_2HisKAHATPase_cResponse_reg
Protein length760 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage410 / 760 aa (53.9%)Merged over positioned domains only.
Domain description1 sCache_2,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa760 aa
Domain-by-domain annotation4 items
2 HisKA#2
388-449 aa · 62 aa · 8.2% of protein
Raw token
HisKA:388:0.0000000895:449:62:643 HATPase_c#3
495-619 aa · 125 aa · 16.4% of protein
Raw token
HATPase_c:495:4.98e-26:619:126:1094 Response_reg#4
645-754 aa · 110 aa · 14.5% of protein
Raw token
Response_reg:645:0.000000000000022:754:114:111- Raw architecture: sCache_2:208:0.000000000141:320:115:152#HisKA:388:0.0000000895:449:62:64#HATPase_c:495:4.98e-26:619:126:109#Response_reg:645:0.000000000000022:754:114:111
- Domain description: 1 sCache_2,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028207305::NZ_JAQLGN010000058.1::G00048
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-2284Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ67_17815RefSeq proteinWP_272123762.1
Context group ID
GCF_028207305::NZ_JAQLGN010000058.1::G00048Context members
PMZ67_RS17820
Partner locus tags
PMZ67_RS17820
Partner old locus tags
PMZ67_17815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_272123762.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6AYA0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6AYA0_CLOSYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ67_RS17820Primary locus identifier stored in the genes table.
Old locus tagPMZ67_17815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLGN010000058.1Sequence record reported by the local genomic context database.
Genomic interval1-2 284 nt2 284 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 284 ntGCF_028207305::NZ_JAQLGN010000058.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028207305::NZ_JAQLGN010000058.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLGN010000058.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 284 nt2 284 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 284 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMZ67_RS17820GCF_028207305#PMZ67_RS17820
HKHybridCurrent focus
1-2 284 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028207305#PMZ67_RS17820The current gene is the representative for this cluster.
PFAM architecturesCache_2 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0645124
Simplified PFAM architecture for HKOC_0645124
PFAM domain coverage: 416 / 760 aa (54.7%)
1 aa760 aa
sCache_2HisKAHATPase_cResponse_reg
- Simplified architecture: sCache_2 + HisKA + HATPase_c + Response_reg
- Raw architecture: sCache_2[201-317] | HisKA[389-451] | HATPase_c[495-620] | Response_reg[645-754]
- Domain count: 4
- Matched identifier: HKOC_0645124
- Positioned domains: sCache_2 201-317 ; HisKA 389-451 ; HATPase_c 495-620 ; Response_reg 645-754
Cluster members and taxonomy
Representative gene: GCF_028207305#PMZ67_RS17820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_028207305
AssemblyASM2820730v1 · Scaffoldhaploid
Genome composition5 103 156 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 118 · HK 59 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key