1 HisKA#1
550-615 aa · 66 aa · 8.4% of protein
Raw token
HisKA:550:0.000000000000151:615:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ67_RS00010
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_028207305
ClassHKTypeClassicLength784 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028207305#PMZ67_RS00010Stable P2CS identifier used across views.
GenomeGCF_028207305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length784 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 784 aa (21.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa784 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
661-764 aa · 104 aa · 13.3% of protein
Raw token
HATPase_c:661:0.0000000000175:764:108:109- Raw architecture: HisKA:550:0.000000000000151:615:66:64#HATPase_c:661:0.0000000000175:764:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028207305::NZ_JAQLGN010000001.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span273-3347Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ67_00010RefSeq proteinWP_150027488.1
Context group ID
GCF_028207305::NZ_JAQLGN010000001.1::G00013Context members
PMZ67_RS00005PMZ67_RS00010
Partner locus tags
PMZ67_RS00005PMZ67_RS00010
Partner old locus tags
PMZ67_00005PMZ67_00010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150027488.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6AMB4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6AMB4_CLOSYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ67_RS00010Primary locus identifier stored in the genes table.
Old locus tagPMZ67_00010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLGN010000001.1Sequence record reported by the local genomic context database.
Genomic interval993-3 347 nt2 355 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span273-3 347 ntGCF_028207305::NZ_JAQLGN010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028207305::NZ_JAQLGN010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLGN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span273-3 347 nt3 075 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
273 nt3 347 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMZ67_RS00005GCF_028207305#PMZ67_RS00005
RROmpR
273-968 nt · Forward (+)
PMZ67_RS00010GCF_028207305#PMZ67_RS00010
HKClassicCurrent focus
993-3 347 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS07355Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0586552
Simplified PFAM architecture for HKOC_0586552
PFAM domain coverage: 169 / 784 aa (21.6%)
1 aa784 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[550-615] | HATPase_c[662-764]
- Domain count: 2
- Matched identifier: HKOC_0586552
- Positioned domains: HisKA 550-615 ; HATPase_c 662-764
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS07355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_028207305
AssemblyASM2820730v1 · Scaffoldhaploid
Genome composition5 103 156 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 118 · HK 59 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key