1 PAS_3#1
203-285 aa · 83 aa · 7.5% of protein
Raw token
PAS_3:203:0.0000000000006:285:83:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ67_RS12110
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_028207305
ClassHKTypeHybridLength1107 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028207305#PMZ67_RS12110Stable P2CS identifier used across views.
GenomeGCF_028207305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
PAS_3PAS_9HisKAHATPase_cResponse_reg
Protein length1107 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage598 / 1107 aa (54.0%)Merged over positioned domains only.
Domain description1 PAS_3,1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1107 aa
Domain-by-domain annotation6 items
2 PAS_9#2
323-430 aa · 108 aa · 9.8% of protein
Raw token
PAS_9:323:0.00000000000246:430:116:1023 HisKA#3
594-660 aa · 67 aa · 6.1% of protein
Raw token
HisKA:594:1.07e-16:660:67:644 HATPase_c#4
707-822 aa · 116 aa · 10.5% of protein
Raw token
HATPase_c:707:5.06e-31:822:116:1095 Response_reg#5
846-951 aa · 106 aa · 9.6% of protein
Raw token
Response_reg:846:2.53e-18:951:106:1116 Response_reg#6
986-1103 aa · 118 aa · 10.7% of protein
Raw token
Response_reg:986:1.68e-29:1103:118:111- Raw architecture: PAS_3:203:0.0000000000006:285:83:89#PAS_9:323:0.00000000000246:430:116:102#HisKA:594:1.07e-16:660:67:64#HATPase_c:707:5.06e-31:822:116:109#Response_reg:846:2.53e-18:951:106:111#Response_reg:986:1.68e-29:1103:118:111
- Domain description: 1 PAS_3,1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028207305::NZ_JAQLGN010000029.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2593-5871Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ67_12110RefSeq proteinWP_243759635.1
Context group ID
GCF_028207305::NZ_JAQLGN010000029.1::G00019Context members
PMZ67_RS12110
Partner locus tags
PMZ67_RS12110
Partner old locus tags
PMZ67_12110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243759635.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ67_RS12110Primary locus identifier stored in the genes table.
Old locus tagPMZ67_12110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLGN010000029.1Sequence record reported by the local genomic context database.
Genomic interval2 593-5 871 nt3 279 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 593-5 871 ntGCF_028207305::NZ_JAQLGN010000029.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028207305::NZ_JAQLGN010000029.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLGN010000029.1All displayed genes belong to this local TCS context.
Neighborhood span2 593-5 871 nt3 279 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 593 nt5 871 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMZ67_RS12110GCF_028207305#PMZ67_RS12110
HKHybridCurrent focus
2 593-5 871 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466485#CLOSYM_RS17170Use this link to inspect the representative gene detail.
PFAM architectureSnoaL_3 + PAS_3 + PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg7 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0228192
Simplified PFAM architecture for HKOC_0228192
PFAM domain coverage: 711 / 1107 aa (64.2%)
1 aa1107 aa
SnoaL_3PAS_3PAS_9HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: SnoaL_3 + PAS_3 + PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: SnoaL_3[32-146] | PAS_3[203-282] | PAS_9[324-430] | HisKA[594-660] | HATPase_c[707-822] | Response_reg[846-954] | Response_reg[986-1102]
- Domain count: 7
- Matched identifier: HKOC_0228192
- Positioned domains: SnoaL_3 32-146 ; PAS_3 203-282 ; PAS_9 324-430 ; HisKA 594-660 ; HATPase_c 707-822 ; Response_reg 846-954 ; Response_reg 986-1102
Cluster members and taxonomy
Representative gene: GCF_000466485#CLOSYM_RS17170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_028207305
AssemblyASM2820730v1 · Scaffoldhaploid
Genome composition5 103 156 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 118 · HK 59 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key