1 HisKA#1
235-301 aa · 67 aa · 9.0% of protein
Raw token
HisKA:235:2.28e-17:301:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ67_RS03370
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_028207305
ClassHKTypeHybridLength748 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028207305#PMZ67_RS03370Stable P2CS identifier used across views.
GenomeGCF_028207305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length748 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage418 / 748 aa (55.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa748 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
348-466 aa · 119 aa · 15.9% of protein
Raw token
HATPase_c:348:2.21e-30:466:119:1093 Response_reg#3
484-596 aa · 113 aa · 15.1% of protein
Raw token
Response_reg:484:1.41e-21:596:115:1114 Response_reg#4
625-743 aa · 119 aa · 15.9% of protein
Raw token
Response_reg:625:6.61e-29:743:119:111- Raw architecture: HisKA:235:2.28e-17:301:67:64#HATPase_c:348:2.21e-30:466:119:109#Response_reg:484:1.41e-21:596:115:111#Response_reg:625:6.61e-29:743:119:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028207305::NZ_JAQLGN010000005.1::G00049
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span72992-75238Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ67_03370RefSeq proteinWP_150028223.1
Context group ID
GCF_028207305::NZ_JAQLGN010000005.1::G00049Context members
PMZ67_RS03370
Partner locus tags
PMZ67_RS03370
Partner old locus tags
PMZ67_03370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150028223.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6ATR0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6ATR0_CLOSYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ67_RS03370Primary locus identifier stored in the genes table.
Old locus tagPMZ67_03370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLGN010000005.1Sequence record reported by the local genomic context database.
Genomic interval72 992-75 238 nt2 247 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 992-75 238 ntGCF_028207305::NZ_JAQLGN010000005.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028207305::NZ_JAQLGN010000005.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLGN010000005.1All displayed genes belong to this local TCS context.
Neighborhood span72 992-75 238 nt2 247 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 992 nt75 238 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMZ67_RS03370GCF_028207305#PMZ67_RS03370
HKHybridCurrent focus
72 992-75 238 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS15885Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0673370
Simplified PFAM architecture for HKOC_0673370
PFAM domain coverage: 416 / 748 aa (55.6%)
1 aa748 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[235-301] | HATPase_c[349-465] | Response_reg[484-597] | Response_reg[625-742]
- Domain count: 4
- Matched identifier: HKOC_0673370
- Positioned domains: HisKA 235-301 ; HATPase_c 349-465 ; Response_reg 484-597 ; Response_reg 625-742
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS15885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_028207305
AssemblyASM2820730v1 · Scaffoldhaploid
Genome composition5 103 156 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 118 · HK 59 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key