1 Response_reg#1
4-114 aa · 111 aa · 50.5% of protein
Raw token
Response_reg:4:4.24e-31:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PL720_RS01830
Response regulator OmpR family
Bifidobacterium breve · GCF_028201995
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028201995#PL720_RS01830Stable P2CS identifier used across views.
GenomeGCF_028201995Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 220 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-219 aa · 73 aa · 33.2% of protein
Raw token
Trans_reg_C:147:0.000000000000916:219:77:77- Raw architecture: Response_reg:4:4.24e-31:114:111:111#Trans_reg_C:147:0.000000000000916:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028201995::NZ_JAQKHM010000002.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53236-55193Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPL720_01825RefSeq proteinWP_003832839.1
Context group ID
GCF_028201995::NZ_JAQKHM010000002.1::G00002Context members
PL720_RS01825PL720_RS01830
Partner locus tags
PL720_RS01825PL720_RS01830
Partner old locus tags
PL720_01820PL720_01825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003832839.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPL720_RS01830Primary locus identifier stored in the genes table.
Old locus tagPL720_01825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKHM010000002.1Sequence record reported by the local genomic context database.
Genomic interval54 531-55 193 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 236-55 193 ntGCF_028201995::NZ_JAQKHM010000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028201995::NZ_JAQKHM010000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKHM010000002.1All displayed genes belong to this local TCS context.
Neighborhood span53 236-55 193 nt1 958 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 236 nt55 193 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PL720_RS01825GCF_028201995#PL720_RS01825
HKClassic
53 236-54 534 nt · Reverse (-)
PL720_RS01830GCF_028201995#PL720_RS01830
RROmpRCurrent focus
54 531-55 193 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002027265#B5D08_RS07865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1126277
Simplified PFAM architecture for RROC_1126277
PFAM domain coverage: 184 / 232 aa (79.3%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[16-126] | Trans_reg_C[159-231]
- Domain count: 2
- Matched identifier: RROC_1126277
- Positioned domains: Response_reg 16-126 ; Response_reg 16-126 ; Trans_reg_C 159-231 ; Trans_reg_C 159-231
Cluster members and taxonomy
Representative gene: GCF_002027265#B5D08_RS07865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_028201995
AssemblyASM2820199v1 · Scaffoldhaploid
Genome composition2 265 102 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key