1 Response_reg#1
16-126 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:16:1.84e-31:126:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5D08_RS07865
Response regulator OmpR family
Bifidobacterium breve · GCF_002027265
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002027265#B5D08_RS07865Stable P2CS identifier used across views.
GenomeGCF_002027265Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 232 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-231 aa · 73 aa · 31.5% of protein
Raw token
Trans_reg_C:159:0.000000000000969:231:77:77- Raw architecture: Response_reg:16:1.84e-31:126:111:111#Trans_reg_C:159:0.000000000000969:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002027265::NZ_MWVR01000017.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span197463-199456Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5D08_07865RefSeq proteinWP_229028616.1
Context group ID
GCF_002027265::NZ_MWVR01000017.1::G00012Context members
B5D08_RS07865B5D08_RS07870
Partner locus tags
B5D08_RS07865B5D08_RS07870
Partner old locus tags
B5D08_07865B5D08_07870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_229028616.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5D08_RS07865Primary locus identifier stored in the genes table.
Old locus tagB5D08_07865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MWVR01000017.1Sequence record reported by the local genomic context database.
Genomic interval197 463-198 161 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span197 463-199 456 ntGCF_002027265::NZ_MWVR01000017.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002027265::NZ_MWVR01000017.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MWVR01000017.1All displayed genes belong to this local TCS context.
Neighborhood span197 463-199 456 nt1 994 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
197 463 nt199 456 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5D08_RS07865GCF_002027265#B5D08_RS07865
RROmpRCurrent focus
197 463-198 161 nt · Forward (+)
B5D08_RS07870GCF_002027265#B5D08_RS07870
HKClassic
198 158-199 456 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002027265#B5D08_RS07865The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1126277
Simplified PFAM architecture for RROC_1126277
PFAM domain coverage: 184 / 232 aa (79.3%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[16-126] | Trans_reg_C[159-231]
- Domain count: 2
- Matched identifier: RROC_1126277
- Positioned domains: Response_reg 16-126 ; Response_reg 16-126 ; Trans_reg_C 159-231 ; Trans_reg_C 159-231
Cluster members and taxonomy
Representative gene: GCF_002027265#B5D08_RS07865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002027265
AssemblyASM202726v1 · Contighaploid
Genome composition2 330 408 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key