1 HAMP#1
85-155 aa · 71 aa · 18.0% of protein
Raw token
HAMP:85:0.00000000152:155:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMG10_RS11035
Histidine kinase, Classic
Coprococcus comes · GCF_027924745
ClassHKTypeClassicLength394 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027924745#QMG10_RS11035Stable P2CS identifier used across views.
GenomeGCF_027924745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length394 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 394 aa (62.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa394 aa
Domain-by-domain annotation3 items
2 HisKA#2
160-226 aa · 67 aa · 17.0% of protein
Raw token
HisKA:160:0.000000000029:226:67:643 HATPase_c#3
276-384 aa · 109 aa · 27.7% of protein
Raw token
HATPase_c:276:1.05e-29:384:109:109- Raw architecture: HAMP:85:0.00000000152:155:71:69#HisKA:160:0.000000000029:226:67:64#HATPase_c:276:1.05e-29:384:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027924745::NZ_BSCI01000013.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span68111-69987Genomic interval covered by the local TCS group.
Identifiers
Old locus tagcomes_22030RefSeq proteinWP_055248693.1
Context group ID
GCF_027924745::NZ_BSCI01000013.1::G00027Context members
QMG10_RS11035QMG10_RS11040
Partner locus tags
QMG10_RS11035QMG10_RS11040
Partner old locus tags
comes_22030comes_22040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055248693.1Primary protein accession used for annex mappings.
UniProt accessionA0A174C7K3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174C7K3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMG10_RS11035Primary locus identifier stored in the genes table.
Old locus tagcomes_22030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSCI01000013.1Sequence record reported by the local genomic context database.
Genomic interval68 111-69 295 nt1 185 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span68 111-69 987 ntGCF_027924745::NZ_BSCI01000013.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027924745::NZ_BSCI01000013.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSCI01000013.1All displayed genes belong to this local TCS context.
Neighborhood span68 111-69 987 nt1 877 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 111 nt69 987 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMG10_RS11035GCF_027924745#QMG10_RS11035
HKClassicCurrent focus
68 111-69 295 nt · Reverse (-)
QMG10_RS11040GCF_027924745#QMG10_RS11040
RROmpR
69 292-69 987 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS10815Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2495860
Simplified PFAM architecture for HKOC_2495860
PFAM domain coverage: 172 / 394 aa (43.7%)
1 aa394 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[160-225] | HATPase_c[279-384]
- Domain count: 2
- Matched identifier: HKOC_2495860
- Positioned domains: HisKA 160-225 ; HATPase_c 279-384
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS10815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_027924745
AssemblyASM2792474v1 · Contighaploid
Genome composition3 216 899 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 71 · HK 35 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key