1 SBP_bac_3#1
43-246 aa · 204 aa · 21.4% of protein
Raw token
SBP_bac_3:43:9.73e-27:246:216:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMG10_RS09860
Histidine kinase, Hybrid
Coprococcus comes · GCF_027924745
ClassHKTypeHybridLength952 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_027924745#QMG10_RS09860Stable P2CS identifier used across views.
GenomeGCF_027924745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length952 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage707 / 952 aa (74.3%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa952 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
281-482 aa · 202 aa · 21.2% of protein
Raw token
SBP_bac_3:281:7.94e-19:482:219:2243 HisKA#3
577-642 aa · 66 aa · 6.9% of protein
Raw token
HisKA:577:8.04e-18:642:66:644 HATPase_c#4
691-808 aa · 118 aa · 12.4% of protein
Raw token
HATPase_c:691:1.31e-26:808:118:1095 Response_reg#5
829-945 aa · 117 aa · 12.3% of protein
Raw token
Response_reg:829:7.93e-29:945:117:111- Raw architecture: SBP_bac_3:43:9.73e-27:246:216:224#SBP_bac_3:281:7.94e-19:482:219:224#HisKA:577:8.04e-18:642:66:64#HATPase_c:691:1.31e-26:808:118:109#Response_reg:829:7.93e-29:945:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_027924745::NZ_BSCI01000011.1::G00022
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span41767-48509Genomic interval covered by the local TCS group.
Identifiers
Old locus tagcomes_19650RefSeq proteinWP_055248587.1
Context group ID
GCF_027924745::NZ_BSCI01000011.1::G00022Context members
QMG10_RS09855QMG10_RS09860QMG10_RS09865
Partner locus tags
QMG10_RS09855QMG10_RS09860QMG10_RS09865
Partner old locus tags
comes_19640comes_19650comes_19660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055248587.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37VHS4Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37VHS4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMG10_RS09860Primary locus identifier stored in the genes table.
Old locus tagcomes_19650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSCI01000011.1Sequence record reported by the local genomic context database.
Genomic interval43 483-46 341 nt2 859 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 767-48 509 ntGCF_027924745::NZ_BSCI01000011.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027924745::NZ_BSCI01000011.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSCI01000011.1All displayed genes belong to this local TCS context.
Neighborhood span41 767-48 509 nt6 743 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 767 nt48 509 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
QMG10_RS09855GCF_027924745#QMG10_RS09855
RRRpfG
41 767-43 257 nt · Forward (+)
QMG10_RS09860GCF_027924745#QMG10_RS09860
HKHybridCurrent focus
43 483-46 341 nt · Forward (+)
QMG10_RS09865GCF_027924745#QMG10_RS09865
HKHybrid
46 437-48 509 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS10370Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0324527
Simplified PFAM architecture for HKOC_0324527
PFAM domain coverage: 497 / 952 aa (52.2%)
1 aa952 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[52-249] | HisKA[577-642] | HATPase_c[692-807] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0324527
- Positioned domains: SBP_bac_3 52-249 ; HisKA 577-642 ; HATPase_c 692-807 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS10370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_027924745
AssemblyASM2792474v1 · Contighaploid
Genome composition3 216 899 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 71 · HK 35 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key