1 HAMP#1
293-362 aa · 70 aa · 11.8% of protein
Raw token
HAMP:293:0.00000000000204:362:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMG10_RS08120
Histidine kinase, Classic
Coprococcus comes · GCF_027924745
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027924745#QMG10_RS08120Stable P2CS identifier used across views.
GenomeGCF_027924745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 593 aa (43.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-451 aa · 75 aa · 12.6% of protein
Raw token
His_kinase:377:9.19e-34:451:75:803 HATPase_c#3
472-584 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:472:0.000000000093:584:113:109- Raw architecture: HAMP:293:0.00000000000204:362:70:69#His_kinase:377:9.19e-34:451:75:80#HATPase_c:472:0.000000000093:584:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027924745::NZ_BSCI01000008.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96303-99679Genomic interval covered by the local TCS group.
Identifiers
Old locus tagcomes_16170RefSeq proteinWP_055247690.1
Context group ID
GCF_027924745::NZ_BSCI01000008.1::G00017Context members
QMG10_RS08115QMG10_RS08120
Partner locus tags
QMG10_RS08115QMG10_RS08120
Partner old locus tags
comes_16160comes_16170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055247690.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37V6C9Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37V6C9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMG10_RS08120Primary locus identifier stored in the genes table.
Old locus tagcomes_16170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSCI01000008.1Sequence record reported by the local genomic context database.
Genomic interval97 898-99 679 nt1 782 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 303-99 679 ntGCF_027924745::NZ_BSCI01000008.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027924745::NZ_BSCI01000008.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSCI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span96 303-99 679 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 303 nt99 679 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMG10_RS08115GCF_027924745#QMG10_RS08115
RRunclassified
96 303-97 901 nt · Forward (+)
QMG10_RS08120GCF_027924745#QMG10_RS08120
HKClassicCurrent focus
97 898-99 679 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS06590Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1093558
Simplified PFAM architecture for HKOC_1093558
PFAM domain coverage: 241 / 593 aa (40.6%)
1 aa593 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-361] | His_kinase[378-453] | HATPase_c[472-585]
- Domain count: 3
- Matched identifier: HKOC_1093558
- Positioned domains: HAMP 311-361 ; His_kinase 378-453 ; HATPase_c 472-585
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS06590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_027924745
AssemblyASM2792474v1 · Contighaploid
Genome composition3 216 899 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 71 · HK 35 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key