1 Response_reg#1
7-116 aa · 110 aa · 62.9% of protein
Raw token
Response_reg:7:2.49e-32:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMG10_RS07600
Response regulator, CheY family
Coprococcus comes · GCF_027924745
ClassRRTypeCheYLength175 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027924745#QMG10_RS07600Stable P2CS identifier used across views.
GenomeGCF_027924745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length175 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 175 aa (62.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa175 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:2.49e-32:116:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027924745::NZ_BSCI01000008.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1019-1546Genomic interval covered by the local TCS group.
Identifiers
Old locus tagcomes_15200RefSeq proteinWP_055247592.1
Context group ID
GCF_027924745::NZ_BSCI01000008.1::G00015Context members
QMG10_RS07600
Partner locus tags
QMG10_RS07600
Partner old locus tags
comes_15200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055247592.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LTE4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LTE4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMG10_RS07600Primary locus identifier stored in the genes table.
Old locus tagcomes_15200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSCI01000008.1Sequence record reported by the local genomic context database.
Genomic interval1 019-1 546 nt528 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 019-1 546 ntGCF_027924745::NZ_BSCI01000008.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027924745::NZ_BSCI01000008.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSCI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span1 019-1 546 nt528 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 019 nt1 546 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QMG10_RS07600GCF_027924745#QMG10_RS07600
RRCheYCurrent focus
1 019-1 546 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS06080Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2193610
Simplified PFAM architecture for RROC_2193610
PFAM domain coverage: 110 / 175 aa (62.9%)
1 aa175 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-116]
- Domain count: 1
- Matched identifier: RROC_2193610
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS06080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_027924745
AssemblyASM2792474v1 · Contighaploid
Genome composition3 216 899 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 71 · HK 35 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key