1 Response_reg#1
11-95 aa · 85 aa · 39.2% of protein
Raw token
Response_reg:11:0.0000000000000142:95:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMG10_RS05405
Response regulator LytTR family
Coprococcus comes · GCF_027924745
ClassRRTypeLytTRLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027924745#QMG10_RS05405Stable P2CS identifier used across views.
GenomeGCF_027924745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 217 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 LytTR#2
119-209 aa · 91 aa · 41.9% of protein
Raw token
LytTR:119:4.37e-19:209:97:98- Raw architecture: Response_reg:11:0.0000000000000142:95:87:111#LytTR:119:4.37e-19:209:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027924745::NZ_BSCI01000005.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span132845-133498Genomic interval covered by the local TCS group.
Identifiers
Old locus tagcomes_10810RefSeq proteinWP_252266083.1
Context group ID
GCF_027924745::NZ_BSCI01000005.1::G00010Context members
QMG10_RS05405
Partner locus tags
QMG10_RS05405
Partner old locus tags
comes_10810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_252266083.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMG10_RS05405Primary locus identifier stored in the genes table.
Old locus tagcomes_10810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSCI01000005.1Sequence record reported by the local genomic context database.
Genomic interval132 845-133 498 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 845-133 498 ntGCF_027924745::NZ_BSCI01000005.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027924745::NZ_BSCI01000005.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSCI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span132 845-133 498 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 845 nt133 498 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QMG10_RS05405GCF_027924745#QMG10_RS05405
RRLytTRCurrent focus
132 845-133 498 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027924745#QMG10_RS05405The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1864093
Simplified PFAM architecture for RROC_1864093
PFAM domain coverage: 178 / 217 aa (82.0%)
1 aa217 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[11-98] | LytTR[120-209]
- Domain count: 2
- Matched identifier: RROC_1864093
- Positioned domains: Response_reg 11-98 ; LytTR 120-209
Cluster members and taxonomy
Representative gene: GCF_027924745#QMG10_RS05405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_027924745
AssemblyASM2792474v1 · Contighaploid
Genome composition3 216 899 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 71 · HK 35 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key