1 Response_reg#1
4-117 aa · 114 aa · 46.0% of protein
Raw token
Response_reg:4:6.58e-30:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG788_RS09050
Response regulator, unclassified
Coprococcus sp. LG100-32 · GCF_027695925
ClassRRTypeunclassifiedLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027695925#PG788_RS09050Stable P2CS identifier used across views.
GenomeGCF_027695925Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 248 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HTH_AraC#2
154-195 aa · 42 aa · 16.9% of protein
Raw token
HTH_AraC:154:0.000000268:195:42:423 HTH_AraC#3
209-245 aa · 37 aa · 14.9% of protein
Raw token
HTH_AraC:209:0.000000000113:245:37:42- Raw architecture: Response_reg:4:6.58e-30:117:114:111#HTH_AraC:154:0.000000268:195:42:42#HTH_AraC:209:0.000000000113:245:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027695925::NZ_JAQEUC010000011.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19033-21716Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027695925::NZ_JAQEUC010000011.1::G00003Context members
PG788_RS09045PG788_RS09050
Partner locus tags
PG788_RS09045PG788_RS09050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071143596.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG788_RS09050Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEUC010000011.1Sequence record reported by the local genomic context database.
Genomic interval20 970-21 716 nt747 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 033-21 716 ntGCF_027695925::NZ_JAQEUC010000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027695925::NZ_JAQEUC010000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEUC010000011.1All displayed genes belong to this local TCS context.
Neighborhood span19 033-21 716 nt2 684 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 033 nt21 716 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG788_RS09045GCF_027695925#PG788_RS09045
HKClassic
19 033-20 871 nt · Forward (+)
PG788_RS09050GCF_027695925#PG788_RS09050
RRunclassifiedCurrent focus
20 970-21 716 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS09050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0750583
Simplified PFAM architecture for RROC_0750583
PFAM domain coverage: 192 / 248 aa (77.4%)
1 aa248 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[168-245]
- Domain count: 2
- Matched identifier: RROC_0750583
- Positioned domains: Response_reg 4-117 ; HTH_18 168-245
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS09050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 994 · GCF_027695925
AssemblyASM2769592v1 · Scaffoldhaploid
Genome composition3 193 648 bp · 40,0% GCCoprococcus sp. LG100-32
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key