1 Response_reg#1
4-113 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:4:1.09e-22:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG744_RS01865
Response regulator OmpR family
Coprobacillus cateniformis · GCF_027695165
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027695165#PG744_RS01865Stable P2CS identifier used across views.
GenomeGCF_027695165Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 220 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 34.5% of protein
Raw token
Trans_reg_C:144:2.11e-22:219:77:77- Raw architecture: Response_reg:4:1.09e-22:113:111:111#Trans_reg_C:144:2.11e-22:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027695165::NZ_JAQEUW010000002.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span149997-150659Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027695165::NZ_JAQEUW010000002.1::G00018Context members
PG744_RS01865
Partner locus tags
PG744_RS01865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790429.1Primary protein accession used for annex mappings.
UniProt accessionE7GF04Primary UniProt accession resolved in the annex database.
UniProt IDE7GF04_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG744_RS01865Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEUW010000002.1Sequence record reported by the local genomic context database.
Genomic interval149 997-150 659 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span149 997-150 659 ntGCF_027695165::NZ_JAQEUW010000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027695165::NZ_JAQEUW010000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEUW010000002.1All displayed genes belong to this local TCS context.
Neighborhood span149 997-150 659 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
149 997 nt150 659 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PG744_RS01865GCF_027695165#PG744_RS01865
RROmpRCurrent focus
149 997-150 659 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS16895Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1723235
Simplified PFAM architecture for RROC_1723235
PFAM domain coverage: 184 / 220 aa (83.6%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1723235
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS16895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_027695165
AssemblyASM2769516v1 · Scaffoldhaploid
Genome composition3 743 417 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key