1 HAMP#1
174-236 aa · 63 aa · 14.1% of protein
Raw token
HAMP:174:0.000000465:236:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG744_RS01375
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_027695165
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027695165#PG744_RS01375Stable P2CS identifier used across views.
GenomeGCF_027695165Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 448 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation3 items
2 HisKA#2
241-304 aa · 64 aa · 14.3% of protein
Raw token
HisKA:241:0.00000000617:304:64:643 HATPase_c#3
349-443 aa · 95 aa · 21.2% of protein
Raw token
HATPase_c:349:0.0000000000000302:443:104:109- Raw architecture: HAMP:174:0.000000465:236:65:69#HisKA:241:0.00000000617:304:64:64#HATPase_c:349:0.0000000000000302:443:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027695165::NZ_JAQEUW010000002.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59291-61295Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027695165::NZ_JAQEUW010000002.1::G00016Context members
PG744_RS01370PG744_RS01375
Partner locus tags
PG744_RS01370PG744_RS01375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_017143824.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG744_RS01375Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEUW010000002.1Sequence record reported by the local genomic context database.
Genomic interval59 949-61 295 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 291-61 295 ntGCF_027695165::NZ_JAQEUW010000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027695165::NZ_JAQEUW010000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEUW010000002.1All displayed genes belong to this local TCS context.
Neighborhood span59 291-61 295 nt2 005 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 291 nt61 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG744_RS01370GCF_027695165#PG744_RS01370
RROmpR
59 291-59 947 nt · Forward (+)
PG744_RS01375GCF_027695165#PG744_RS01375
HKClassicCurrent focus
59 949-61 295 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000269565#HMPREF0273_RS0103945Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1987979
Simplified PFAM architecture for HKOC_1987979
PFAM domain coverage: 159 / 448 aa (35.5%)
1 aa448 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[241-304] | HATPase_c[349-443]
- Domain count: 2
- Matched identifier: HKOC_1987979
- Positioned domains: HisKA 241-304 ; HATPase_c 349-443
Cluster members and taxonomy
Representative gene: GCF_000269565#HMPREF0273_RS0103945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_027695165
AssemblyASM2769516v1 · Scaffoldhaploid
Genome composition3 743 417 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key