1 HisKA#1
240-305 aa · 66 aa · 14.3% of protein
Raw token
HisKA:240:0.0000000000000072:305:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS16535
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692525
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692525#PG714_RS16535Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 460 aa (38.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
351-459 aa · 109 aa · 23.7% of protein
Raw token
HATPase_c:351:1.18e-21:459:109:109- Raw architecture: HisKA:240:0.0000000000000072:305:66:64#HATPase_c:351:1.18e-21:459:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692525::NZ_JAQEYS010000038.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span845-2859Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000038.1::G00042Context members
PG714_RS16530PG714_RS16535
Partner locus tags
PG714_RS16530PG714_RS16535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270606741.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS16535Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000038.1Sequence record reported by the local genomic context database.
Genomic interval1 477-2 859 nt1 383 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span845-2 859 ntGCF_027692525::NZ_JAQEYS010000038.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000038.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000038.1All displayed genes belong to this local TCS context.
Neighborhood span845-2 859 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
845 nt2 859 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG714_RS16530GCF_027692525#PG714_RS16530
RROmpR
845-1 504 nt · Forward (+)
PG714_RS16535GCF_027692525#PG714_RS16535
HKClassicCurrent focus
1 477-2 859 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692525#PG714_RS16535The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1840575
Simplified PFAM architecture for HKOC_1840575
PFAM domain coverage: 173 / 460 aa (37.6%)
1 aa460 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[241-304] | HATPase_c[351-459]
- Domain count: 2
- Matched identifier: HKOC_1840575
- Positioned domains: HisKA 241-304 ; HATPase_c 351-459
Cluster members and taxonomy
Representative gene: GCF_027692525#PG714_RS16535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key