1 dCache_1#1
206-314 aa · 109 aa · 16.8% of protein
Raw token
dCache_1:206:0.0000000533:314:118:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS01105
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692525
ClassHKTypeClassicLength650 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692525#PG714_RS01105Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length650 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage366 / 650 aa (56.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa650 aa
Domain-by-domain annotation4 items
2 HAMP#2
332-400 aa · 69 aa · 10.6% of protein
Raw token
HAMP:332:0.00000000000131:400:69:693 His_kinase#3
422-503 aa · 82 aa · 12.6% of protein
Raw token
His_kinase:422:7.32e-24:503:82:804 HATPase_c#4
522-627 aa · 106 aa · 16.3% of protein
Raw token
HATPase_c:522:0.00000000000000617:627:109:109- Raw architecture: dCache_1:206:0.0000000533:314:118:195#HAMP:332:0.00000000000131:400:69:69#His_kinase:422:7.32e-24:503:82:80#HATPase_c:522:0.00000000000000617:627:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692525::NZ_JAQEYS010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span232604-236048Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000001.1::G00004Context members
PG714_RS01105PG714_RS01110
Partner locus tags
PG714_RS01105PG714_RS01110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117576295.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS01105Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000001.1Sequence record reported by the local genomic context database.
Genomic interval232 604-234 556 nt1 953 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span232 604-236 048 ntGCF_027692525::NZ_JAQEYS010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span232 604-236 048 nt3 445 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
232 604 nt236 048 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG714_RS01105GCF_027692525#PG714_RS01105
HKClassicCurrent focus
232 604-234 556 nt · Forward (+)
PG714_RS01110GCF_027692525#PG714_RS01110
RRunclassified
234 528-236 048 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692425#PG422_RS01090Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0898162
Simplified PFAM architecture for HKOC_0898162
PFAM domain coverage: 235 / 650 aa (36.2%)
1 aa650 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[352-399] | His_kinase[422-503] | HATPase_c[522-626]
- Domain count: 3
- Matched identifier: HKOC_0898162
- Positioned domains: HAMP 352-399 ; His_kinase 422-503 ; HATPase_c 522-626
Cluster members and taxonomy
Representative gene: GCF_027692425#PG422_RS01090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key