1 HAMP#1
184-254 aa · 71 aa · 14.3% of protein
Raw token
HAMP:184:0.0000000000000567:254:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS12005
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692525
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692525#PG714_RS12005Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 498 aa (50.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation3 items
2 HisKA#2
268-332 aa · 65 aa · 13.1% of protein
Raw token
HisKA:268:0.0000000000000016:332:65:643 HATPase_c#3
379-492 aa · 114 aa · 22.9% of protein
Raw token
HATPase_c:379:4.45e-32:492:114:109- Raw architecture: HAMP:184:0.0000000000000567:254:71:69#HisKA:268:0.0000000000000016:332:65:64#HATPase_c:379:4.45e-32:492:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692525::NZ_JAQEYS010000015.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18570-20748Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000015.1::G00022Context members
PG714_RS12000PG714_RS12005
Partner locus tags
PG714_RS12000PG714_RS12005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016439594.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS12005Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000015.1Sequence record reported by the local genomic context database.
Genomic interval19 252-20 748 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 570-20 748 ntGCF_027692525::NZ_JAQEYS010000015.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000015.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000015.1All displayed genes belong to this local TCS context.
Neighborhood span18 570-20 748 nt2 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 570 nt20 748 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG714_RS12000GCF_027692525#PG714_RS12000
RROmpR
18 570-19 259 nt · Reverse (-)
PG714_RS12005GCF_027692525#PG714_RS12005
HKClassicCurrent focus
19 252-20 748 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664575#PGR17_RS11150Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1490371
Simplified PFAM architecture for HKOC_1490371
PFAM domain coverage: 222 / 498 aa (44.6%)
1 aa498 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[210-254] | HisKA[267-331] | HATPase_c[379-490]
- Domain count: 3
- Matched identifier: HKOC_1490371
- Positioned domains: HAMP 210-254 ; HisKA 267-331 ; HATPase_c 379-490
Cluster members and taxonomy
Representative gene: GCF_027664575#PGR17_RS11150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key