1 HAMP#1
75-141 aa · 67 aa · 17.7% of protein
Raw token
HAMP:75:0.0000972:141:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS11870
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692525
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692525#PG714_RS11870Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 378 aa (63.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation3 items
2 HisKA#2
152-215 aa · 64 aa · 16.9% of protein
Raw token
HisKA:152:0.0000000000774:215:64:643 HATPase_c#3
264-372 aa · 109 aa · 28.8% of protein
Raw token
HATPase_c:264:2.05e-28:372:110:109- Raw architecture: HAMP:75:0.0000972:141:69:69#HisKA:152:0.0000000000774:215:64:64#HATPase_c:264:2.05e-28:372:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692525::NZ_JAQEYS010000014.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75875-77693Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000014.1::G00020Context members
PG714_RS11870PG714_RS11875
Partner locus tags
PG714_RS11870PG714_RS11875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009263776.1Primary protein accession used for annex mappings.
UniProt accessionA0A4R3JSM7Primary UniProt accession resolved in the annex database.
UniProt IDA0A4R3JSM7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS11870Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000014.1Sequence record reported by the local genomic context database.
Genomic interval75 875-77 011 nt1 137 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 875-77 693 ntGCF_027692525::NZ_JAQEYS010000014.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000014.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000014.1All displayed genes belong to this local TCS context.
Neighborhood span75 875-77 693 nt1 819 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 875 nt77 693 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG714_RS11870GCF_027692525#PG714_RS11870
HKClassicCurrent focus
75 875-77 011 nt · Reverse (-)
PG714_RS11875GCF_027692525#PG714_RS11875
RROmpR
77 001-77 693 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003402615#FAEUMB_RS00640Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2628158
Simplified PFAM architecture for HKOC_2628158
PFAM domain coverage: 173 / 378 aa (45.8%)
1 aa378 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[153-215] | HATPase_c[264-373]
- Domain count: 2
- Matched identifier: HKOC_2628158
- Positioned domains: HisKA 153-215 ; HATPase_c 264-373
Cluster members and taxonomy
Representative gene: GCF_003402615#FAEUMB_RS00640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key