1 HisKA#1
230-295 aa · 66 aa · 14.9% of protein
Raw token
HisKA:230:0.00000000188:295:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS10580
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692525
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692525#PG714_RS10580Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 442 aa (38.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa442 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
338-440 aa · 103 aa · 23.3% of protein
Raw token
HATPase_c:338:0.00000000000000569:440:103:109- Raw architecture: HisKA:230:0.00000000188:295:66:64#HATPase_c:338:0.00000000000000569:440:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692525::NZ_JAQEYS010000012.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35956-37934Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000012.1::G00014Context members
PG714_RS10575PG714_RS10580
Partner locus tags
PG714_RS10575PG714_RS10580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009263626.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS10580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000012.1Sequence record reported by the local genomic context database.
Genomic interval36 606-37 934 nt1 329 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 956-37 934 ntGCF_027692525::NZ_JAQEYS010000012.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000012.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000012.1All displayed genes belong to this local TCS context.
Neighborhood span35 956-37 934 nt1 979 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 956 nt37 934 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG714_RS10575GCF_027692525#PG714_RS10575
RROmpR
35 956-36 630 nt · Forward (+)
PG714_RS10580GCF_027692525#PG714_RS10580
HKClassicCurrent focus
36 606-37 934 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692425#PG422_RS10590Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2057107
Simplified PFAM architecture for HKOC_2057107
PFAM domain coverage: 164 / 442 aa (37.1%)
1 aa442 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[231-292] | HATPase_c[338-439]
- Domain count: 2
- Matched identifier: HKOC_2057107
- Positioned domains: HisKA 231-292 ; HATPase_c 338-439
Cluster members and taxonomy
Representative gene: GCF_027692425#PG422_RS10590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key