1 Response_reg#1
2-114 aa · 113 aa · 50.0% of protein
Raw token
Response_reg:2:3.48e-31:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS09365
Response regulator OmpR family
Faecalimonas umbilicata · GCF_027692525
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692525#PG714_RS09365Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:147:5.25e-36:220:77:77- Raw architecture: Response_reg:2:3.48e-31:114:113:111#Trans_reg_C:147:5.25e-36:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692525::NZ_JAQEYS010000010.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36986-39008Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000010.1::G00008Context members
PG714_RS09365PG714_RS09370
Partner locus tags
PG714_RS09365PG714_RS09370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008974865.1Primary protein accession used for annex mappings.
UniProt accessionA0A4R3JSV5Primary UniProt accession resolved in the annex database.
UniProt IDA0A4R3JSV5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS09365Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000010.1Sequence record reported by the local genomic context database.
Genomic interval36 986-37 666 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 986-39 008 ntGCF_027692525::NZ_JAQEYS010000010.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000010.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000010.1All displayed genes belong to this local TCS context.
Neighborhood span36 986-39 008 nt2 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 986 nt39 008 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG714_RS09365GCF_027692525#PG714_RS09365
RROmpRCurrent focus
36 986-37 666 nt · Forward (+)
PG714_RS09370GCF_027692525#PG714_RS09370
HKClassic
37 656-39 008 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003402615#FAEUMB_RS04470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1421195
Simplified PFAM architecture for RROC_1421195
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-114] | Trans_reg_C[149-220]
- Domain count: 2
- Matched identifier: RROC_1421195
- Positioned domains: Response_reg 2-114 ; Response_reg 2-114 ; Trans_reg_C 149-220 ; Trans_reg_C 149-220
Cluster members and taxonomy
Representative gene: GCF_003402615#FAEUMB_RS04470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key