1 PAS_3#1
487-577 aa · 91 aa · 11.2% of protein
Raw token
PAS_3:487:0.000000000791:577:92:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS06600
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692525
ClassHKTypeClassicLength810 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692525#PG714_RS06600Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
PAS_3His_kinaseHATPase_c
Protein length810 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage262 / 810 aa (32.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa810 aa
Domain-by-domain annotation3 items
2 His_kinase#2
612-684 aa · 73 aa · 9.0% of protein
Raw token
His_kinase:612:2.59e-21:684:74:803 HATPase_c#3
702-799 aa · 98 aa · 12.1% of protein
Raw token
HATPase_c:702:0.000000000000471:799:105:109- Raw architecture: PAS_3:487:0.000000000791:577:92:89#His_kinase:612:2.59e-21:684:74:80#HATPase_c:702:0.000000000000471:799:105:109
- Domain description: 1 PAS_3,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692525::NZ_JAQEYS010000006.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53114-56309Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000006.1::G00053Context members
PG714_RS06600PG714_RS06605
Partner locus tags
PG714_RS06600PG714_RS06605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117578149.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS06600Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000006.1Sequence record reported by the local genomic context database.
Genomic interval53 114-55 546 nt2 433 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 114-56 309 ntGCF_027692525::NZ_JAQEYS010000006.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000006.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000006.1All displayed genes belong to this local TCS context.
Neighborhood span53 114-56 309 nt3 196 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 114 nt56 309 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG714_RS06600GCF_027692525#PG714_RS06600
HKClassicCurrent focus
53 114-55 546 nt · Forward (+)
PG714_RS06605GCF_027692525#PG714_RS06605
RRunclassified
55 524-56 309 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692425#PG422_RS07890Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0541266
Simplified PFAM architecture for HKOC_0541266
PFAM domain coverage: 263 / 810 aa (32.5%)
1 aa810 aa
PAS_3His_kinaseHATPase_c
- Simplified architecture: PAS_3 + His_kinase + HATPase_c
- Raw architecture: PAS_3[489-574] | His_kinase[606-684] | HATPase_c[702-799]
- Domain count: 3
- Matched identifier: HKOC_0541266
- Positioned domains: PAS_3 489-574 ; His_kinase 606-684 ; HATPase_c 702-799
Cluster members and taxonomy
Representative gene: GCF_027692425#PG422_RS07890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key