1 Response_reg#1
6-110 aa · 105 aa · 19.1% of protein
Raw token
Response_reg:6:8.36e-29:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS06355
Response regulator, RpfG family
Faecalimonas umbilicata · GCF_027692525
ClassRRTypeRpfGLength550 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027692525#PG714_RS06355Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage382 / 550 aa (69.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 HD#2
167-300 aa · 134 aa · 24.4% of protein
Raw token
HD:167:0.000000000000539:300:134:1103 GGDEF#3
390-532 aa · 143 aa · 26.0% of protein
Raw token
GGDEF:390:2.55e-40:532:156:160- Raw architecture: Response_reg:6:8.36e-29:110:106:111#HD:167:0.000000000000539:300:134:110#GGDEF:390:2.55e-40:532:156:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027692525::NZ_JAQEYS010000006.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9174-10826Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000006.1::G00050Context members
PG714_RS06355
Partner locus tags
PG714_RS06355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117578689.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS06355Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000006.1Sequence record reported by the local genomic context database.
Genomic interval9 174-10 826 nt1 653 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 174-10 826 ntGCF_027692525::NZ_JAQEYS010000006.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000006.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000006.1All displayed genes belong to this local TCS context.
Neighborhood span9 174-10 826 nt1 653 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 174 nt10 826 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PG714_RS06355GCF_027692525#PG714_RS06355
RRRpfGCurrent focus
9 174-10 826 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692425#PG422_RS07650Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0074255
Simplified PFAM architecture for RROC_0074255
PFAM domain coverage: 388 / 550 aa (70.5%)
1 aa550 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[6-112] | HD_5[187-323] | GGDEF[390-533]
- Domain count: 3
- Matched identifier: RROC_0074255
- Positioned domains: Response_reg 6-112 ; HD_5 187-323 ; GGDEF 390-533
Cluster members and taxonomy
Representative gene: GCF_027692425#PG422_RS07650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key