1 Response_reg#1
5-118 aa · 114 aa · 21.3% of protein
Raw token
Response_reg:5:4.15e-27:118:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS03390
Response regulator, unclassified
Faecalimonas umbilicata · GCF_027692525
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692525#PG714_RS03390Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 535 aa (34.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
441-483 aa · 43 aa · 8.0% of protein
Raw token
HTH_AraC:441:0.000000002:483:43:423 HTH_AraC#3
504-531 aa · 28 aa · 5.2% of protein
Raw token
HTH_AraC:504:0.00000733:531:28:42- Raw architecture: Response_reg:5:4.15e-27:118:117:111#HTH_AraC:441:0.000000002:483:43:42#HTH_AraC:504:0.00000733:531:28:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692525::NZ_JAQEYS010000002.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span216654-220045Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000002.1::G00026Context members
PG714_RS03390PG714_RS03395
Partner locus tags
PG714_RS03390PG714_RS03395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117578002.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS03390Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000002.1Sequence record reported by the local genomic context database.
Genomic interval216 654-218 261 nt1 608 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span216 654-220 045 ntGCF_027692525::NZ_JAQEYS010000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000002.1All displayed genes belong to this local TCS context.
Neighborhood span216 654-220 045 nt3 392 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 654 nt220 045 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG714_RS03390GCF_027692525#PG714_RS03390
RRunclassifiedCurrent focus
216 654-218 261 nt · Forward (+)
PG714_RS03395GCF_027692525#PG714_RS03395
HKClassic
218 261-220 045 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692425#PG422_RS04690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0101920
Simplified PFAM architecture for RROC_0101920
PFAM domain coverage: 191 / 535 aa (35.7%)
1 aa535 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[455-532]
- Domain count: 2
- Matched identifier: RROC_0101920
- Positioned domains: Response_reg 5-117 ; HTH_18 455-532
Cluster members and taxonomy
Representative gene: GCF_027692425#PG422_RS04690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key