1 Response_reg#1
5-112 aa · 108 aa · 21.3% of protein
Raw token
Response_reg:5:1.49e-31:112:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS01110
Response regulator, unclassified
Faecalimonas umbilicata · GCF_027692525
ClassRRTypeunclassifiedLength506 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692525#PG714_RS01110Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length506 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 506 aa (36.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa506 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
414-455 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:414:0.000000000751:455:42:423 HTH_AraC#3
468-502 aa · 35 aa · 6.9% of protein
Raw token
HTH_AraC:468:0.000000566:502:35:42- Raw architecture: Response_reg:5:1.49e-31:112:108:111#HTH_AraC:414:0.000000000751:455:42:42#HTH_AraC:468:0.000000566:502:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692525::NZ_JAQEYS010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span232604-236048Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000001.1::G00004Context members
PG714_RS01105PG714_RS01110
Partner locus tags
PG714_RS01105PG714_RS01110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009262732.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS01110Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000001.1Sequence record reported by the local genomic context database.
Genomic interval234 528-236 048 nt1 521 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span232 604-236 048 ntGCF_027692525::NZ_JAQEYS010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span232 604-236 048 nt3 445 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
232 604 nt236 048 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG714_RS01105GCF_027692525#PG714_RS01105
HKClassic
232 604-234 556 nt · Forward (+)
PG714_RS01110GCF_027692525#PG714_RS01110
RRunclassifiedCurrent focus
234 528-236 048 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664575#PGR17_RS04840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0151801
Simplified PFAM architecture for RROC_0151801
PFAM domain coverage: 191 / 506 aa (37.7%)
1 aa506 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[427-506]
- Domain count: 2
- Matched identifier: RROC_0151801
- Positioned domains: Response_reg 5-115 ; HTH_18 427-506
Cluster members and taxonomy
Representative gene: GCF_027664575#PGR17_RS04840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key