1 Response_reg#1
19-127 aa · 109 aa · 43.8% of protein
Raw token
Response_reg:19:4.33e-19:127:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG714_RS00970
Response regulator LytTR family
Faecalimonas umbilicata · GCF_027692525
ClassRRTypeLytTRLength249 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027692525#PG714_RS00970Stable P2CS identifier used across views.
GenomeGCF_027692525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 249 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-242 aa · 93 aa · 37.3% of protein
Raw token
LytTR:150:0.00000000000000177:242:98:98- Raw architecture: Response_reg:19:4.33e-19:127:112:111#LytTR:150:0.00000000000000177:242:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027692525::NZ_JAQEYS010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span206856-207605Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692525::NZ_JAQEYS010000001.1::G00002Context members
PG714_RS00970
Partner locus tags
PG714_RS00970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270196259.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG714_RS00970Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYS010000001.1Sequence record reported by the local genomic context database.
Genomic interval206 856-207 605 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span206 856-207 605 ntGCF_027692525::NZ_JAQEYS010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692525::NZ_JAQEYS010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span206 856-207 605 nt750 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
206 856 nt207 605 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PG714_RS00970GCF_027692525#PG714_RS00970
RRLytTRCurrent focus
206 856-207 605 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664575#PGR17_RS04700Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0738155
Simplified PFAM architecture for RROC_0738155
PFAM domain coverage: 197 / 249 aa (79.1%)
1 aa249 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[19-126] | LytTR[153-241]
- Domain count: 2
- Matched identifier: RROC_0738155
- Positioned domains: Response_reg 19-126 ; LytTR 153-241
Cluster members and taxonomy
Representative gene: GCF_027664575#PGR17_RS04700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692525
AssemblyASM2769252v1 · Scaffoldhaploid
Genome composition3 390 170 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key