1 HAMP#1
133-202 aa · 70 aa · 15.9% of protein
Raw token
HAMP:133:0.00000000000871:202:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG422_RS16365
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692425
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692425#PG422_RS16365Stable P2CS identifier used across views.
GenomeGCF_027692425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 440 aa (49.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
227-292 aa · 66 aa · 15.0% of protein
Raw token
HisKA:227:0.0000000117:292:66:643 HATPase_c#3
340-420 aa · 81 aa · 18.4% of protein
Raw token
HATPase_c:340:7.77e-16:420:86:109- Raw architecture: HAMP:133:0.00000000000871:202:70:69#HisKA:227:0.0000000117:292:66:64#HATPase_c:340:7.77e-16:420:86:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692425::NZ_JAQEYW010000035.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8408-10424Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692425::NZ_JAQEYW010000035.1::G00038Context members
PG422_RS16360PG422_RS16365
Partner locus tags
PG422_RS16360PG422_RS16365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270601609.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG422_RS16365Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYW010000035.1Sequence record reported by the local genomic context database.
Genomic interval9 102-10 424 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 408-10 424 ntGCF_027692425::NZ_JAQEYW010000035.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692425::NZ_JAQEYW010000035.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYW010000035.1All displayed genes belong to this local TCS context.
Neighborhood span8 408-10 424 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 408 nt10 424 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG422_RS16360GCF_027692425#PG422_RS16360
RROmpR
8 408-9 070 nt · Forward (+)
PG422_RS16365GCF_027692425#PG422_RS16365
HKClassicCurrent focus
9 102-10 424 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692425#PG422_RS16365The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2077818
Simplified PFAM architecture for HKOC_2077818
PFAM domain coverage: 207 / 440 aa (47.0%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[153-201] | HisKA[228-292] | HATPase_c[341-433]
- Domain count: 3
- Matched identifier: HKOC_2077818
- Positioned domains: HAMP 153-201 ; HisKA 228-292 ; HATPase_c 341-433
Cluster members and taxonomy
Representative gene: GCF_027692425#PG422_RS16365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692425
AssemblyASM2769242v1 · Scaffoldhaploid
Genome composition3 388 739 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key