1 HisKA#1
85-154 aa · 70 aa · 22.9% of protein
Raw token
HisKA:85:0.00000000000667:154:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG422_RS14045
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692425
ClassHKTypeClassicLength306 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692425#PG422_RS14045Stable P2CS identifier used across views.
GenomeGCF_027692425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length306 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 306 aa (57.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa306 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-305 aa · 106 aa · 34.6% of protein
Raw token
HATPase_c:200:3.89e-26:305:107:109- Raw architecture: HisKA:85:0.00000000000667:154:70:64#HATPase_c:200:3.89e-26:305:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692425::NZ_JAQEYW010000019.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42055-43668Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692425::NZ_JAQEYW010000019.1::G00025Context members
PG422_RS14040PG422_RS14045
Partner locus tags
PG422_RS14040PG422_RS14045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117578345.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG422_RS14045Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYW010000019.1Sequence record reported by the local genomic context database.
Genomic interval42 748-43 668 nt921 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 055-43 668 ntGCF_027692425::NZ_JAQEYW010000019.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692425::NZ_JAQEYW010000019.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYW010000019.1All displayed genes belong to this local TCS context.
Neighborhood span42 055-43 668 nt1 614 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 055 nt43 668 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG422_RS14040GCF_027692425#PG422_RS14040
RROmpR
42 055-42 747 nt · Forward (+)
PG422_RS14045GCF_027692425#PG422_RS14045
HKClassicCurrent focus
42 748-43 668 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692425#PG422_RS14045The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2881720
Simplified PFAM architecture for HKOC_2881720
PFAM domain coverage: 174 / 306 aa (56.9%)
1 aa306 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-154] | HATPase_c[201-305]
- Domain count: 2
- Matched identifier: HKOC_2881720
- Positioned domains: HisKA 86-154 ; HATPase_c 201-305
Cluster members and taxonomy
Representative gene: GCF_027692425#PG422_RS14045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692425
AssemblyASM2769242v1 · Scaffoldhaploid
Genome composition3 388 739 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key