1 HAMP#1
153-222 aa · 70 aa · 15.0% of protein
Raw token
HAMP:153:0.00000000000000621:222:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG422_RS12350
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692425
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692425#PG422_RS12350Stable P2CS identifier used across views.
GenomeGCF_027692425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 467 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-312 aa · 62 aa · 13.3% of protein
Raw token
HisKA:251:0.00000000275:312:62:643 HATPase_c#3
358-458 aa · 101 aa · 21.6% of protein
Raw token
HATPase_c:358:7.73e-23:458:101:109- Raw architecture: HAMP:153:0.00000000000000621:222:70:69#HisKA:251:0.00000000275:312:62:64#HATPase_c:358:7.73e-23:458:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692425::NZ_JAQEYW010000015.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4271-6335Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692425::NZ_JAQEYW010000015.1::G00016Context members
PG422_RS12350PG422_RS12355
Partner locus tags
PG422_RS12350PG422_RS12355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270601405.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG422_RS12350Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYW010000015.1Sequence record reported by the local genomic context database.
Genomic interval4 271-5 674 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 271-6 335 ntGCF_027692425::NZ_JAQEYW010000015.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692425::NZ_JAQEYW010000015.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYW010000015.1All displayed genes belong to this local TCS context.
Neighborhood span4 271-6 335 nt2 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 271 nt6 335 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG422_RS12350GCF_027692425#PG422_RS12350
HKClassicCurrent focus
4 271-5 674 nt · Reverse (-)
PG422_RS12355GCF_027692425#PG422_RS12355
RROmpR
5 658-6 335 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692425#PG422_RS12350The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1756031
Simplified PFAM architecture for HKOC_1756031
PFAM domain coverage: 217 / 467 aa (46.5%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[170-222] | HisKA[249-312] | HATPase_c[359-458]
- Domain count: 3
- Matched identifier: HKOC_1756031
- Positioned domains: HAMP 170-222 ; HisKA 249-312 ; HATPase_c 359-458
Cluster members and taxonomy
Representative gene: GCF_027692425#PG422_RS12350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692425
AssemblyASM2769242v1 · Scaffoldhaploid
Genome composition3 388 739 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key