1 HisKA#1
129-174 aa · 46 aa · 13.6% of protein
Raw token
HisKA:129:0.0000488:174:52:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG422_RS09055
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027692425
ClassHKTypeClassicLength337 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027692425#PG422_RS09055Stable P2CS identifier used across views.
GenomeGCF_027692425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 337 aa (45.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-326 aa · 106 aa · 31.5% of protein
Raw token
HATPase_c:221:5.05e-17:326:107:109- Raw architecture: HisKA:129:0.0000488:174:52:64#HATPase_c:221:5.05e-17:326:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027692425::NZ_JAQEYW010000008.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span149569-151247Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027692425::NZ_JAQEYW010000008.1::G00059Context members
PG422_RS09050PG422_RS09055
Partner locus tags
PG422_RS09050PG422_RS09055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117577283.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG422_RS09055Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEYW010000008.1Sequence record reported by the local genomic context database.
Genomic interval150 234-151 247 nt1 014 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span149 569-151 247 ntGCF_027692425::NZ_JAQEYW010000008.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027692425::NZ_JAQEYW010000008.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEYW010000008.1All displayed genes belong to this local TCS context.
Neighborhood span149 569-151 247 nt1 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
149 569 nt151 247 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG422_RS09050GCF_027692425#PG422_RS09050
RROmpR
149 569-150 237 nt · Forward (+)
PG422_RS09055GCF_027692425#PG422_RS09055
HKClassicCurrent focus
150 234-151 247 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692425#PG422_RS09055The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2845611
Simplified PFAM architecture for HKOC_2845611
PFAM domain coverage: 107 / 337 aa (31.8%)
1 aa337 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-327]
- Domain count: 1
- Matched identifier: HKOC_2845611
- Positioned domains: HATPase_c 221-327
Cluster members and taxonomy
Representative gene: GCF_027692425#PG422_RS09055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027692425
AssemblyASM2769242v1 · Scaffoldhaploid
Genome composition3 388 739 bp · 41,0% GCFaecalimonas umbilicata
Signal transduction countsGenes 112 · HK 54 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key