1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:8.66e-27:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGR17_RS00780
Response regulator OmpR family
Faecalimonas umbilicata · GCF_027664575
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027664575#PGR17_RS00780Stable P2CS identifier used across views.
GenomeGCF_027664575Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:147:1.24e-27:220:75:77- Raw architecture: Response_reg:4:8.66e-27:113:111:111#Trans_reg_C:147:1.24e-27:220:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027664575::NZ_JAQDFQ010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span161814-162485Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027664575::NZ_JAQDFQ010000001.1::G00001Context members
PGR17_RS00780
Partner locus tags
PGR17_RS00780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117576699.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGR17_RS00780Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDFQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval161 814-162 485 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span161 814-162 485 ntGCF_027664575::NZ_JAQDFQ010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027664575::NZ_JAQDFQ010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDFQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span161 814-162 485 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
161 814 nt162 485 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PGR17_RS00780GCF_027664575#PGR17_RS00780
RROmpRCurrent focus
161 814-162 485 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664575#PGR17_RS00780The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1616327
Simplified PFAM architecture for RROC_1616327
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1616327
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_027664575#PGR17_RS00780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027664575
AssemblyASM2766457v1 · Scaffoldhaploid
Genome composition2 993 051 bp · 41,5% GCFaecalimonas umbilicata
Signal transduction countsGenes 84 · HK 42 · RR 42CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key