1 Response_reg#1
14-116 aa · 103 aa · 44.8% of protein
Raw token
Response_reg:14:0.00000000495:116:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGR30_RS03440
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_027664505
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027664505#PGR30_RS03440Stable P2CS identifier used across views.
GenomeGCF_027664505Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 230 aa (67.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-221 aa · 53 aa · 23.0% of protein
Raw token
HTH_LUXR:169:0.000000000000185:221:53:58- Raw architecture: Response_reg:14:0.00000000495:116:103:111#HTH_LUXR:169:0.000000000000185:221:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027664505::NZ_JAQDFT010000003.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span248421-249113Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027664505::NZ_JAQDFT010000003.1::G00007Context members
PGR30_RS03440
Partner locus tags
PGR30_RS03440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270197665.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGR30_RS03440Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDFT010000003.1Sequence record reported by the local genomic context database.
Genomic interval248 421-249 113 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span248 421-249 113 ntGCF_027664505::NZ_JAQDFT010000003.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027664505::NZ_JAQDFT010000003.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDFT010000003.1All displayed genes belong to this local TCS context.
Neighborhood span248 421-249 113 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
248 421 nt249 113 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PGR30_RS03440GCF_027664505#PGR30_RS03440
RRNarLCurrent focus
248 421-249 113 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664505#PGR30_RS03440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1226532
Simplified PFAM architecture for RROC_1226532
PFAM domain coverage: 159 / 230 aa (69.1%)
1 aa230 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[14-118] | GerE[168-221]
- Domain count: 2
- Matched identifier: RROC_1226532
- Positioned domains: Response_reg 14-118 ; GerE 168-221
Cluster members and taxonomy
Representative gene: GCF_027664505#PGR30_RS03440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_027664505
AssemblyASM2766450v1 · Scaffoldhaploid
Genome composition2 335 040 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 29 · HK 12 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key