1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.0000307:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGR39_RS15110
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_027663965
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027663965#PGR39_RS15110Stable P2CS identifier used across views.
GenomeGCF_027663965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage223 / 305 aa (73.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.000000038:150:66:643 HATPase_c#3
202-305 aa · 104 aa · 34.1% of protein
Raw token
HATPase_c:202:4.02e-30:305:104:109- Raw architecture: HAMP:4:0.0000307:56:53:69#HisKA:85:0.000000038:150:66:64#HATPase_c:202:4.02e-30:305:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027663965::NZ_JAQDGU010000028.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3526-5141Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027663965::NZ_JAQDGU010000028.1::G00030Context members
PGR39_RS15110PGR39_RS15115
Partner locus tags
PGR39_RS15110PGR39_RS15115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021395513.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGR39_RS15110Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDGU010000028.1Sequence record reported by the local genomic context database.
Genomic interval3 526-4 443 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 526-5 141 ntGCF_027663965::NZ_JAQDGU010000028.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027663965::NZ_JAQDGU010000028.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDGU010000028.1All displayed genes belong to this local TCS context.
Neighborhood span3 526-5 141 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 526 nt5 141 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGR39_RS15110GCF_027663965#PGR39_RS15110
HKClassicCurrent focus
3 526-4 443 nt · Reverse (-)
PGR39_RS15115GCF_027663965#PGR39_RS15115
RROmpR
4 449-5 141 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450085#QIW_RS00060Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882100
Simplified PFAM architecture for HKOC_2882100
PFAM domain coverage: 170 / 305 aa (55.7%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[199-304]
- Domain count: 2
- Matched identifier: HKOC_2882100
- Positioned domains: HisKA 85-148 ; HATPase_c 199-304
Cluster members and taxonomy
Representative gene: GCF_000450085#QIW_RS00060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_027663965
AssemblyASM2766396v1 · Scaffoldhaploid
Genome composition3 696 032 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 48 · RR 44CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key