1 SBP_bac_3#1
44-260 aa · 217 aa · 22.8% of protein
Raw token
SBP_bac_3:44:1.79e-31:260:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGR39_RS01665
Histidine kinase, Hybrid
Blautia massiliensis (ex Durand et al. 2017) · GCF_027663965
ClassHKTypeHybridLength952 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027663965#PGR39_RS01665Stable P2CS identifier used across views.
GenomeGCF_027663965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length952 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage728 / 952 aa (76.5%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa952 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
282-486 aa · 205 aa · 21.5% of protein
Raw token
SBP_bac_3:282:0.00000000000074:486:221:2243 HisKA#3
571-639 aa · 69 aa · 7.2% of protein
Raw token
HisKA:571:2.75e-19:639:69:644 HATPase_c#4
685-803 aa · 119 aa · 12.5% of protein
Raw token
HATPase_c:685:5.6e-29:803:119:1095 Response_reg#5
829-946 aa · 118 aa · 12.4% of protein
Raw token
Response_reg:829:7.07e-31:946:118:111- Raw architecture: SBP_bac_3:44:1.79e-31:260:227:224#SBP_bac_3:282:0.00000000000074:486:221:224#HisKA:571:2.75e-19:639:69:64#HATPase_c:685:5.6e-29:803:119:109#Response_reg:829:7.07e-31:946:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027663965::NZ_JAQDGU010000002.1::G00019
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span40220-46068Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027663965::NZ_JAQDGU010000002.1::G00019Context members
PGR39_RS01665PGR39_RS01670
Partner locus tags
PGR39_RS01665PGR39_RS01670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270436714.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGR39_RS01665Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDGU010000002.1Sequence record reported by the local genomic context database.
Genomic interval40 220-43 078 nt2 859 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 220-46 068 ntGCF_027663965::NZ_JAQDGU010000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027663965::NZ_JAQDGU010000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDGU010000002.1All displayed genes belong to this local TCS context.
Neighborhood span40 220-46 068 nt5 849 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 220 nt46 068 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGR39_RS01665GCF_027663965#PGR39_RS01665
HKHybridCurrent focus
40 220-43 078 nt · Reverse (-)
PGR39_RS01670GCF_027663965#PGR39_RS01670
HKHybrid
43 126-46 068 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027663965#PGR39_RS01665The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0324980
Simplified PFAM architecture for HKOC_0324980
PFAM domain coverage: 519 / 952 aa (54.5%)
1 aa952 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[45-260] | HisKA[571-639] | HATPase_c[686-801] | Response_reg[829-946]
- Domain count: 4
- Matched identifier: HKOC_0324980
- Positioned domains: SBP_bac_3 45-260 ; HisKA 571-639 ; HATPase_c 686-801 ; Response_reg 829-946
Cluster members and taxonomy
Representative gene: GCF_027663965#PGR39_RS01665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_027663965
AssemblyASM2766396v1 · Scaffoldhaploid
Genome composition3 696 032 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 48 · RR 44CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key