1 HisKA#1
230-288 aa · 59 aa · 13.2% of protein
Raw token
HisKA:230:0.0000579:288:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGR39_RS06390
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_027663965
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027663965#PGR39_RS06390Stable P2CS identifier used across views.
GenomeGCF_027663965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 448 aa (36.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
333-437 aa · 105 aa · 23.4% of protein
Raw token
HATPase_c:333:1.03e-17:437:110:109- Raw architecture: HisKA:230:0.0000579:288:59:64#HATPase_c:333:1.03e-17:437:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027663965::NZ_JAQDGU010000006.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span126309-128317Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027663965::NZ_JAQDGU010000006.1::G00045Context members
PGR39_RS06390PGR39_RS06395
Partner locus tags
PGR39_RS06390PGR39_RS06395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270437084.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGR39_RS06390Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDGU010000006.1Sequence record reported by the local genomic context database.
Genomic interval126 309-127 655 nt1 347 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span126 309-128 317 ntGCF_027663965::NZ_JAQDGU010000006.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027663965::NZ_JAQDGU010000006.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDGU010000006.1All displayed genes belong to this local TCS context.
Neighborhood span126 309-128 317 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 309 nt128 317 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGR39_RS06390GCF_027663965#PGR39_RS06390
HKClassicCurrent focus
126 309-127 655 nt · Reverse (-)
PGR39_RS06395GCF_027663965#PGR39_RS06395
RROmpR
127 652-128 317 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027663965#PGR39_RS06390The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1994627
Simplified PFAM architecture for HKOC_1994627
PFAM domain coverage: 103 / 448 aa (23.0%)
1 aa448 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[334-436]
- Domain count: 1
- Matched identifier: HKOC_1994627
- Positioned domains: HATPase_c 334-436
Cluster members and taxonomy
Representative gene: GCF_027663965#PGR39_RS06390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_027663965
AssemblyASM2766396v1 · Scaffoldhaploid
Genome composition3 696 032 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 48 · RR 44CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key