1 HisKA_3#1
206-269 aa · 64 aa · 14.5% of protein
Raw token
HisKA_3:206:0.0000000000000235:269:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O4C42_RS04265
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_027214665
ClassHKTypeClassicLength441 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027214665#O4C42_RS04265Stable P2CS identifier used across views.
GenomeGCF_027214665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length441 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 441 aa (41.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa441 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-434 aa · 119 aa · 27.0% of protein
Raw token
HATPase_c:316:0.000000123:434:120:109- Raw architecture: HisKA_3:206:0.0000000000000235:269:64:68#HATPase_c:316:0.000000123:434:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027214665::NZ_JAPWEK010000003.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219250-221228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO4C42_04270RefSeq proteinWP_269354234.1
Context group ID
GCF_027214665::NZ_JAPWEK010000003.1::G00009Context members
O4C42_RS04260O4C42_RS04265
Partner locus tags
O4C42_RS04260O4C42_RS04265
Partner old locus tags
O4C42_04265O4C42_04270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_269354234.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO4C42_RS04265Primary locus identifier stored in the genes table.
Old locus tagO4C42_04270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPWEK010000003.1Sequence record reported by the local genomic context database.
Genomic interval219 903-221 228 nt1 326 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 250-221 228 ntGCF_027214665::NZ_JAPWEK010000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027214665::NZ_JAPWEK010000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPWEK010000003.1All displayed genes belong to this local TCS context.
Neighborhood span219 250-221 228 nt1 979 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 250 nt221 228 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
O4C42_RS04260GCF_027214665#O4C42_RS04260
RRNarL
219 250-219 903 nt · Reverse (-)
O4C42_RS04265GCF_027214665#O4C42_RS04265
HKClassicCurrent focus
219 903-221 228 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027214665#O4C42_RS04265The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2066898
Simplified PFAM architecture for HKOC_2066898
PFAM domain coverage: 66 / 441 aa (15.0%)
1 aa441 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[206-271]
- Domain count: 1
- Matched identifier: HKOC_2066898
- Positioned domains: HisKA_3 206-271
Cluster members and taxonomy
Representative gene: GCF_027214665#O4C42_RS04265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_027214665
AssemblyASM2721466v1 · Contighaploid
Genome composition2 314 385 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 23 · HK 11 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key