1 HisKA_3#1
210-271 aa · 62 aa · 14.5% of protein
Raw token
HisKA_3:210:0.00000000000109:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O4C76_RS03875
Histidine kinase, Classic
Bifidobacterium breve · GCF_027214485
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027214485#O4C76_RS03875Stable P2CS identifier used across views.
GenomeGCF_027214485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 429 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-414 aa · 85 aa · 19.8% of protein
Raw token
HATPase_c:330:0.000000000357:414:98:109- Raw architecture: HisKA_3:210:0.00000000000109:271:65:68#HATPase_c:330:0.000000000357:414:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027214485::NZ_JAPWEV010000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span357559-359524Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO4C76_03890RefSeq proteinWP_269355038.1
Context group ID
GCF_027214485::NZ_JAPWEV010000002.1::G00006Context members
O4C76_RS03875O4C76_RS03880
Partner locus tags
O4C76_RS03875O4C76_RS03880
Partner old locus tags
O4C76_03890O4C76_03895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_269355038.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO4C76_RS03875Primary locus identifier stored in the genes table.
Old locus tagO4C76_03890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPWEV010000002.1Sequence record reported by the local genomic context database.
Genomic interval357 559-358 848 nt1 290 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span357 559-359 524 ntGCF_027214485::NZ_JAPWEV010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027214485::NZ_JAPWEV010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPWEV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span357 559-359 524 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
357 559 nt359 524 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
O4C76_RS03875GCF_027214485#O4C76_RS03875
HKClassicCurrent focus
357 559-358 848 nt · Forward (+)
O4C76_RS03880GCF_027214485#O4C76_RS03880
RRNarL
358 841-359 524 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027214485#O4C76_RS03875The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2184630
Simplified PFAM architecture for HKOC_2184630
PFAM domain coverage: 155 / 429 aa (36.1%)
1 aa429 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-416]
- Domain count: 2
- Matched identifier: HKOC_2184630
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-416
Cluster members and taxonomy
Representative gene: GCF_027214485#O4C76_RS03875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_027214485
AssemblyASM2721448v1 · Contighaploid
Genome composition2 345 014 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key