1 HAMP#1
94-161 aa · 68 aa · 17.3% of protein
Raw token
HAMP:94:0.0000000123:161:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OZZ06_RS16280
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_026805035
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026805035#OZZ06_RS16280Stable P2CS identifier used across views.
GenomeGCF_026805035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 392 aa (60.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HisKA#2
179-241 aa · 63 aa · 16.1% of protein
Raw token
HisKA:179:0.00000148:241:63:643 HATPase_c#3
287-392 aa · 106 aa · 27.0% of protein
Raw token
HATPase_c:287:2.59e-20:392:108:109- Raw architecture: HAMP:94:0.0000000123:161:68:69#HisKA:179:0.00000148:241:63:64#HATPase_c:287:2.59e-20:392:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026805035::NZ_JAPRBC010000019.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18030-19870Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026805035::NZ_JAPRBC010000019.1::G00022Context members
OZZ06_RS16280OZZ06_RS14190
Partner locus tags
OZZ06_RS16280OZZ06_RS14190
Partner old locus tags
OZZ06_14190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004612308.1Primary protein accession used for annex mappings.
UniProt accessionA0A564TS46Primary UniProt accession resolved in the annex database.
UniProt IDA0A564TS46_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOZZ06_RS16280Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPRBC010000019.1Sequence record reported by the local genomic context database.
Genomic interval18 030-19 208 nt1 179 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 030-19 870 ntGCF_026805035::NZ_JAPRBC010000019.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026805035::NZ_JAPRBC010000019.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPRBC010000019.1All displayed genes belong to this local TCS context.
Neighborhood span18 030-19 870 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 030 nt19 870 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OZZ06_RS16280GCF_026805035#OZZ06_RS16280
HKClassicCurrent focus
18 030-19 208 nt · Reverse (-)
OZZ06_RS14190GCF_026805035#OZZ06_RS14190
RROmpR
19 196-19 870 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406655#ARA00_RS00135Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2512094
Simplified PFAM architecture for HKOC_2512094
PFAM domain coverage: 213 / 392 aa (54.3%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[114-159] | HisKA[179-241] | HATPase_c[287-390]
- Domain count: 3
- Matched identifier: HKOC_2512094
- Positioned domains: HAMP 114-159 ; HisKA 179-241 ; HATPase_c 287-390
Cluster members and taxonomy
Representative gene: GCF_001406655#ARA00_RS00135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_026805035
AssemblyASM2680503v1 · Contighaploid
Genome composition3 351 414 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 38 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key