1 HisKA#1
133-197 aa · 65 aa · 18.3% of protein
Raw token
HisKA:133:0.00000000000778:197:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OZZ06_RS00230
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_026805035
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026805035#OZZ06_RS00230Stable P2CS identifier used across views.
GenomeGCF_026805035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 356 aa (49.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-350 aa · 110 aa · 30.9% of protein
Raw token
HATPase_c:241:1.63e-25:350:111:109- Raw architecture: HisKA:133:0.00000000000778:197:65:64#HATPase_c:241:1.63e-25:350:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026805035::NZ_JAPRBC010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53872-55648Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOZZ06_00230RefSeq proteinWP_009245163.1
Context group ID
GCF_026805035::NZ_JAPRBC010000001.1::G00001Context members
OZZ06_RS00225OZZ06_RS00230
Partner locus tags
OZZ06_RS00225OZZ06_RS00230
Partner old locus tags
OZZ06_00225OZZ06_00230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245163.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NGL3Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NGL3_MEDG5Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOZZ06_RS00230Primary locus identifier stored in the genes table.
Old locus tagOZZ06_00230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPRBC010000001.1Sequence record reported by the local genomic context database.
Genomic interval54 578-55 648 nt1 071 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 872-55 648 ntGCF_026805035::NZ_JAPRBC010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026805035::NZ_JAPRBC010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPRBC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span53 872-55 648 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 872 nt55 648 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OZZ06_RS00225GCF_026805035#OZZ06_RS00225
RROmpR
53 872-54 585 nt · Reverse (-)
OZZ06_RS00230GCF_026805035#OZZ06_RS00230
HKClassicCurrent focus
54 578-55 648 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS06905Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2770232
Simplified PFAM architecture for HKOC_2770232
PFAM domain coverage: 281 / 356 aa (78.9%)
1 aa356 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[10-117] | HisKA[132-196] | HATPase_c[242-349]
- Domain count: 3
- Matched identifier: HKOC_2770232
- Positioned domains: DUF4118 10-117 ; HisKA 132-196 ; HATPase_c 242-349
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS06905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_026805035
AssemblyASM2680503v1 · Contighaploid
Genome composition3 351 414 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 38 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key