1 Response_reg#1
3-111 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:3:0.00000000000625:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OZZ06_RS15870
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_026805035
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_026805035#OZZ06_RS15870Stable P2CS identifier used across views.
GenomeGCF_026805035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 241 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-230 aa · 91 aa · 37.8% of protein
Raw token
LytTR:140:7.75e-17:230:96:98- Raw architecture: Response_reg:3:0.00000000000625:111:111:111#LytTR:140:7.75e-17:230:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_026805035::NZ_JAPRBC010000032.1::G00034
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2280-3005Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOZZ06_15870RefSeq proteinWP_101874932.1
Context group ID
GCF_026805035::NZ_JAPRBC010000032.1::G00034Context members
OZZ06_RS15870
Partner locus tags
OZZ06_RS15870
Partner old locus tags
OZZ06_15870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101874932.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NNH1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NNH1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOZZ06_RS15870Primary locus identifier stored in the genes table.
Old locus tagOZZ06_15870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPRBC010000032.1Sequence record reported by the local genomic context database.
Genomic interval2 280-3 005 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 280-3 005 ntGCF_026805035::NZ_JAPRBC010000032.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026805035::NZ_JAPRBC010000032.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPRBC010000032.1All displayed genes belong to this local TCS context.
Neighborhood span2 280-3 005 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 280 nt3 005 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OZZ06_RS15870GCF_026805035#OZZ06_RS15870
RRLytTRCurrent focus
2 280-3 005 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS13750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0866918
Simplified PFAM architecture for RROC_0866918
PFAM domain coverage: 205 / 241 aa (85.1%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-117] | LytTR[141-230]
- Domain count: 2
- Matched identifier: RROC_0866918
- Positioned domains: Response_reg 3-117 ; Response_reg 3-117 ; LytTR 141-230 ; LytTR 141-230
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS13750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_026805035
AssemblyASM2680503v1 · Contighaploid
Genome composition3 351 414 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 38 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key