1 Response_reg#1
4-112 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:4:6.32e-22:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OZZ06_RS12960
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_026805035
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_026805035#OZZ06_RS12960Stable P2CS identifier used across views.
GenomeGCF_026805035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 236 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-226 aa · 87 aa · 36.9% of protein
Raw token
LytTR:140:7.98e-18:226:92:98- Raw architecture: Response_reg:4:6.32e-22:112:112:111#LytTR:140:7.98e-18:226:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_026805035::NZ_JAPRBC010000014.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span66221-66931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOZZ06_12960RefSeq proteinWP_268804901.1
Context group ID
GCF_026805035::NZ_JAPRBC010000014.1::G00017Context members
OZZ06_RS12960
Partner locus tags
OZZ06_RS12960
Partner old locus tags
OZZ06_12960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_268804901.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOZZ06_RS12960Primary locus identifier stored in the genes table.
Old locus tagOZZ06_12960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPRBC010000014.1Sequence record reported by the local genomic context database.
Genomic interval66 221-66 931 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 221-66 931 ntGCF_026805035::NZ_JAPRBC010000014.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026805035::NZ_JAPRBC010000014.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPRBC010000014.1All displayed genes belong to this local TCS context.
Neighborhood span66 221-66 931 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 221 nt66 931 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OZZ06_RS12960GCF_026805035#OZZ06_RS12960
RRLytTRCurrent focus
66 221-66 931 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026805035#OZZ06_RS12960The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1005042
Simplified PFAM architecture for RROC_1005042
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[140-226]
- Domain count: 2
- Matched identifier: RROC_1005042
- Positioned domains: Response_reg 4-113 ; LytTR 140-226
Cluster members and taxonomy
Representative gene: GCF_026805035#OZZ06_RS12960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_026805035
AssemblyASM2680503v1 · Contighaploid
Genome composition3 351 414 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 38 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key