1 dCache_1#1
42-245 aa · 204 aa · 35.7% of protein
Raw token
dCache_1:42:0.00000000444:245:208:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OZZ06_RS07425
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_026805035
ClassHKTypeClassicLength572 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026805035#OZZ06_RS07425Stable P2CS identifier used across views.
GenomeGCF_026805035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length572 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage459 / 572 aa (80.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa572 aa
Domain-by-domain annotation4 items
2 HAMP#2
281-351 aa · 71 aa · 12.4% of protein
Raw token
HAMP:281:0.000000359:351:71:693 His_kinase#3
367-446 aa · 80 aa · 14.0% of protein
Raw token
His_kinase:367:2.79e-29:446:80:804 HATPase_c#4
463-566 aa · 104 aa · 18.2% of protein
Raw token
HATPase_c:463:0.000000000000958:566:110:109- Raw architecture: dCache_1:42:0.00000000444:245:208:195#HAMP:281:0.000000359:351:71:69#His_kinase:367:2.79e-29:446:80:80#HATPase_c:463:0.000000000000958:566:110:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026805035::NZ_JAPRBC010000004.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span214934-218166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOZZ06_07425RefSeq proteinWP_242972199.1
Context group ID
GCF_026805035::NZ_JAPRBC010000004.1::G00039Context members
OZZ06_RS07425OZZ06_RS07430
Partner locus tags
OZZ06_RS07425OZZ06_RS07430
Partner old locus tags
OZZ06_07425OZZ06_07430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242972199.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOZZ06_RS07425Primary locus identifier stored in the genes table.
Old locus tagOZZ06_07425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPRBC010000004.1Sequence record reported by the local genomic context database.
Genomic interval214 934-216 652 nt1 719 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span214 934-218 166 ntGCF_026805035::NZ_JAPRBC010000004.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026805035::NZ_JAPRBC010000004.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPRBC010000004.1All displayed genes belong to this local TCS context.
Neighborhood span214 934-218 166 nt3 233 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
214 934 nt218 166 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OZZ06_RS07425GCF_026805035#OZZ06_RS07425
HKClassicCurrent focus
214 934-216 652 nt · Forward (+)
OZZ06_RS07430GCF_026805035#OZZ06_RS07430
RRunclassified
216 640-218 166 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865405#CDL27_RS16130Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1203120
Simplified PFAM architecture for HKOC_1203120
PFAM domain coverage: 181 / 572 aa (31.6%)
1 aa572 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[367-446] | HATPase_c[465-565]
- Domain count: 2
- Matched identifier: HKOC_1203120
- Positioned domains: His_kinase 367-446 ; HATPase_c 465-565
Cluster members and taxonomy
Representative gene: GCF_002865405#CDL27_RS16130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_026805035
AssemblyASM2680503v1 · Contighaploid
Genome composition3 351 414 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 38 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key