1 Response_reg#1
4-112 aa · 109 aa · 49.8% of protein
Raw token
Response_reg:4:7.62e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OZZ06_RS01755
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_026805035
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026805035#OZZ06_RS01755Stable P2CS identifier used across views.
GenomeGCF_026805035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 219 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 33.8% of protein
Raw token
Trans_reg_C:145:3.68e-23:218:76:77- Raw architecture: Response_reg:4:7.62e-32:112:111:111#Trans_reg_C:145:3.68e-23:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026805035::NZ_JAPRBC010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span356934-358954Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOZZ06_01755RefSeq proteinWP_004841910.1
Context group ID
GCF_026805035::NZ_JAPRBC010000001.1::G00004Context members
OZZ06_RS01755OZZ06_RS01760
Partner locus tags
OZZ06_RS01755OZZ06_RS01760
Partner old locus tags
OZZ06_01755OZZ06_01760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004841910.1Primary protein accession used for annex mappings.
UniProt accessionA7B125Primary UniProt accession resolved in the annex database.
UniProt IDA7B125_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOZZ06_RS01755Primary locus identifier stored in the genes table.
Old locus tagOZZ06_01755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPRBC010000001.1Sequence record reported by the local genomic context database.
Genomic interval356 934-357 593 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span356 934-358 954 ntGCF_026805035::NZ_JAPRBC010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026805035::NZ_JAPRBC010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPRBC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span356 934-358 954 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
356 934 nt358 954 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OZZ06_RS01755GCF_026805035#OZZ06_RS01755
RROmpRCurrent focus
356 934-357 593 nt · Forward (+)
OZZ06_RS01760GCF_026805035#OZZ06_RS01760
HKClassic
357 584-358 954 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS05505Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1767677
Simplified PFAM architecture for RROC_1767677
PFAM domain coverage: 181 / 219 aa (82.6%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1767677
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS05505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_026805035
AssemblyASM2680503v1 · Contighaploid
Genome composition3 351 414 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 38 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key