1 Response_reg#1
13-125 aa · 113 aa · 48.3% of protein
Raw token
Response_reg:13:0.000000000037:125:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OGI63_RS01340
Response regulator NarL family
Bifidobacterium sp. KRGSERBCFTRI · GCF_025908335
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025908335#OGI63_RS01340Stable P2CS identifier used across views.
GenomeGCF_025908335Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 234 aa (72.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-224 aa · 57 aa · 24.4% of protein
Raw token
HTH_LUXR:168:0.0000000000000198:224:57:58- Raw architecture: Response_reg:13:0.000000000037:125:114:111#HTH_LUXR:168:0.0000000000000198:224:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025908335::NZ_CP109653.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span321068-321772Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOGI63_01340RefSeq proteinWP_041777191.1
Context group ID
GCF_025908335::NZ_CP109653.1::G00002Context members
OGI63_RS01340
Partner locus tags
OGI63_RS01340
Partner old locus tags
OGI63_01340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_041777191.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOGI63_RS01340Primary locus identifier stored in the genes table.
Old locus tagOGI63_01340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP109653.1Sequence record reported by the local genomic context database.
Genomic interval321 068-321 772 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span321 068-321 772 ntGCF_025908335::NZ_CP109653.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025908335::NZ_CP109653.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP109653.1All displayed genes belong to this local TCS context.
Neighborhood span321 068-321 772 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
321 068 nt321 772 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OGI63_RS01340GCF_025908335#OGI63_RS01340
RRNarLCurrent focus
321 068-321 772 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025908335#OGI63_RS01340The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1065996
Simplified PFAM architecture for RROC_1065996
PFAM domain coverage: 163 / 234 aa (69.7%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-120] | GerE[170-223]
- Domain count: 2
- Matched identifier: RROC_1065996
- Positioned domains: Response_reg 12-120 ; GerE 170-223
Cluster members and taxonomy
Representative gene: GCF_025908335#OGI63_RS01340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 985 571 · GCF_025908335
AssemblyASM2590833v1 · Chromosomehaploid
Genome composition3 381 084 bp · 60,0% GCBifidobacterium sp. KRGSERBCFTRI
Signal transduction countsGenes 38 · HK 16 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key